Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 AC023824.1-201ENST00000562945 2975 ntBASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 WASH7P-201ENST00000488147 1351 ntBASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 TBC1D3P6-201ENST00000505954 962 ntBASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 PSME2-217ENST00000615264 874 ntTSL 5 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 GARS-210ENST00000627489 324 ntTSL 4 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 PSME2-218ENST00000630027 185 ntTSL 3 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 AC132872.4-202ENST00000622924 2756 ntBASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 DKKL1P1-201ENST00000400550 698 ntBASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 AC027612.2-202ENST00000445955 1199 ntBASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 AC005777.1-201ENST00000588332 187 ntBASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 AC006116.2-201ENST00000589958 988 ntBASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
SHANK3Q9BYB0 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHANK3Q9BYB0 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC18.16■□□□□ 0.5
SHANK3Q9BYB0 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHANK3Q9BYB0 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC18.16■□□□□ 0.5
SHANK3Q9BYB0 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SHANK3Q9BYB0 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SHANK3Q9BYB0 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SHANK3Q9BYB0 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC18.16■□□□□ 0.5
SHANK3Q9BYB0 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC18.16■□□□□ 0.5
SHANK3Q9BYB0 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHANK3Q9BYB0 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC18.16■□□□□ 0.5
SHANK3Q9BYB0 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
SHANK3Q9BYB0 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC18.16■□□□□ 0.5
SHANK3Q9BYB0 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SHANK3Q9BYB0 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
SHANK3Q9BYB0 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHANK3Q9BYB0 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 AL136084.1-201ENST00000449172 318 ntBASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 AC112250.1-201ENST00000504640 745 ntBASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 AL512324.3-201ENST00000619383 882 ntBASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHANK3Q9BYB0 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms