Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.1□□□□□ -0.15
CLHC1Q8NHS4 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLHC1Q8NHS4 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
CLHC1Q8NHS4 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLHC1Q8NHS4 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLHC1Q8NHS4 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLHC1Q8NHS4 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
CLHC1Q8NHS4 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC14.1□□□□□ -0.15
CLHC1Q8NHS4 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC14.1□□□□□ -0.15
CLHC1Q8NHS4 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC14.1□□□□□ -0.15
CLHC1Q8NHS4 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC14.1□□□□□ -0.15
CLHC1Q8NHS4 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLHC1Q8NHS4 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLHC1Q8NHS4 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLHC1Q8NHS4 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLHC1Q8NHS4 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLHC1Q8NHS4 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC14.1□□□□□ -0.15
CLHC1Q8NHS4 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 BAATP1-201ENST00000412284 1225 ntBASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 AC012441.1-201ENST00000446669 685 ntBASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 MESTP3-201ENST00000503460 968 ntBASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 AC106760.1-201ENST00000508690 800 ntBASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 MIR5189-201ENST00000577370 114 ntBASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLHC1Q8NHS4 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLHC1Q8NHS4 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC14.08□□□□□ -0.15
CLHC1Q8NHS4 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
CLHC1Q8NHS4 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLHC1Q8NHS4 AC130686.1-201ENST00000622936 2466 ntBASIC14.08□□□□□ -0.15
CLHC1Q8NHS4 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLHC1Q8NHS4 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CLHC1Q8NHS4 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLHC1Q8NHS4 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLHC1Q8NHS4 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLHC1Q8NHS4 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLHC1Q8NHS4 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
CLHC1Q8NHS4 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLHC1Q8NHS4 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CLHC1Q8NHS4 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CLHC1Q8NHS4 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.08□□□□□ -0.16
CLHC1Q8NHS4 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLHC1Q8NHS4 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CLHC1Q8NHS4 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC14.08□□□□□ -0.16
CLHC1Q8NHS4 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.08□□□□□ -0.16
CLHC1Q8NHS4 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.08□□□□□ -0.16
CLHC1Q8NHS4 TP53TG3HP-202ENST00000569755 579 ntBASIC14.08□□□□□ -0.16
CLHC1Q8NHS4 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.08□□□□□ -0.16
CLHC1Q8NHS4 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms