Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 SRC-202ENST00000373558 4304 ntTSL 5 BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 CNTNAP3P2-201ENST00000617175 3861 ntBASIC17.47■□□□□ 0.39
RNF20Q5VTR2 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 GSAP-205ENST00000430584 600 ntTSL 5 BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 CTBP2P5-201ENST00000454986 1264 ntBASIC17.47■□□□□ 0.39
RNF20Q5VTR2 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 AC008687.7-202ENST00000637404 953 ntBASIC17.47■□□□□ 0.39
RNF20Q5VTR2 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 HSPA8P5-201ENST00000456928 2069 ntBASIC17.47■□□□□ 0.39
RNF20Q5VTR2 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 AL137784.3-201ENST00000623858 2288 ntBASIC17.47■□□□□ 0.39
RNF20Q5VTR2 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 AC064801.2-201ENST00000625052 1303 ntBASIC17.47■□□□□ 0.39
RNF20Q5VTR2 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF20Q5VTR2 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 MIR326-201ENST00000362220 95 ntBASIC17.46■□□□□ 0.39
RNF20Q5VTR2 HNRNPA1P27-201ENST00000412087 955 ntBASIC17.46■□□□□ 0.39
RNF20Q5VTR2 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 AL359881.3-201ENST00000602640 1721 ntBASIC17.46■□□□□ 0.39
RNF20Q5VTR2 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF20Q5VTR2 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC17.46■□□□□ 0.38
RNF20Q5VTR2 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC17.46■□□□□ 0.38
RNF20Q5VTR2 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
RNF20Q5VTR2 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 AC026954.1-201ENST00000429771 1293 ntBASIC17.45■□□□□ 0.38
RNF20Q5VTR2 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 AP006547.1-201ENST00000563435 692 ntBASIC17.45■□□□□ 0.38
RNF20Q5VTR2 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 AL512343.1-201ENST00000605837 169 ntBASIC17.45■□□□□ 0.38
RNF20Q5VTR2 RPS24-214ENST00000613865 538 ntTSL 5 BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms