Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14□□□□□ -0.17
MSX2P35548 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC14□□□□□ -0.17
MSX2P35548 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14□□□□□ -0.17
MSX2P35548 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC14□□□□□ -0.17
MSX2P35548 DUX4L47-201ENST00000566374 394 ntBASIC14□□□□□ -0.17
MSX2P35548 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
MSX2P35548 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC14□□□□□ -0.17
MSX2P35548 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14□□□□□ -0.17
MSX2P35548 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
MSX2P35548 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14□□□□□ -0.17
MSX2P35548 AC073869.1-201ENST00000415574 2762 ntBASIC14□□□□□ -0.17
MSX2P35548 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC14□□□□□ -0.17
MSX2P35548 GRAMD4P3-201ENST00000621665 1669 ntBASIC14□□□□□ -0.17
MSX2P35548 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 AC102953.2-201ENST00000609755 3026 ntBASIC14□□□□□ -0.17
MSX2P35548 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
MSX2P35548 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 RASA4-203ENST00000461209 3244 ntTSL 2 BASIC14□□□□□ -0.17
MSX2P35548 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC13.99□□□□□ -0.17
MSX2P35548 AC003102.2-201ENST00000589195 1469 ntBASIC13.99□□□□□ -0.17
MSX2P35548 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC13.99□□□□□ -0.17
MSX2P35548 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
MSX2P35548 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
MSX2P35548 AL928654.5-201ENST00000624831 2501 ntBASIC13.99□□□□□ -0.17
MSX2P35548 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
MSX2P35548 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC13.99□□□□□ -0.17
MSX2P35548 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
MSX2P35548 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 AL645937.2-201ENST00000396808 931 ntBASIC13.99□□□□□ -0.17
MSX2P35548 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC13.99□□□□□ -0.17
MSX2P35548 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
MSX2P35548 HLA-V-204ENST00000476601 1289 ntBASIC13.99□□□□□ -0.17
MSX2P35548 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
MSX2P35548 AC138761.1-201ENST00000584393 385 ntBASIC13.99□□□□□ -0.17
MSX2P35548 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 AC004835.2-201ENST00000603762 682 ntBASIC13.99□□□□□ -0.17
MSX2P35548 TEX48-202ENST00000612244 662 ntTSL 3 BASIC13.99□□□□□ -0.17
MSX2P35548 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC13.99□□□□□ -0.17
MSX2P35548 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC13.99□□□□□ -0.17
MSX2P35548 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC13.99□□□□□ -0.17
MSX2P35548 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
MSX2P35548 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
MSX2P35548 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
MSX2P35548 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC13.99□□□□□ -0.17
MSX2P35548 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
MSX2P35548 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX2P35548 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC13.98□□□□□ -0.17
MSX2P35548 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC13.98□□□□□ -0.17
MSX2P35548 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC13.98□□□□□ -0.17
MSX2P35548 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
MSX2P35548 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC13.98□□□□□ -0.17
MSX2P35548 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
MSX2P35548 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 KRT8P35-201ENST00000483942 1338 ntBASIC13.98□□□□□ -0.17
MSX2P35548 MRPL37P1-201ENST00000592451 1337 ntBASIC13.98□□□□□ -0.17
MSX2P35548 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC13.98□□□□□ -0.17
MSX2P35548 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
MSX2P35548 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC13.98□□□□□ -0.17
MSX2P35548 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 130.9 ms