Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC9P31274 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC9P31274 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC9P31274 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC9P31274 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC9P31274 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC9P31274 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC9P31274 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
HOXC9P31274 BCAS2P2-201ENST00000425064 674 ntBASIC19.01■□□□□ 0.63
HOXC9P31274 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC19.01■□□□□ 0.63
HOXC9P31274 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC9P31274 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC9P31274 AC226150.1-201ENST00000544259 466 ntBASIC19.01■□□□□ 0.63
HOXC9P31274 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC19.01■□□□□ 0.63
HOXC9P31274 AC145285.5-201ENST00000562217 361 ntBASIC19.01■□□□□ 0.63
HOXC9P31274 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC19.01■□□□□ 0.63
HOXC9P31274 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC19.01■□□□□ 0.63
HOXC9P31274 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC19.01■□□□□ 0.63
HOXC9P31274 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC9P31274 AL451007.2-201ENST00000632004 563 ntBASIC19.01■□□□□ 0.63
HOXC9P31274 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC9P31274 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC9P31274 AC104640.1-201ENST00000562617 2109 ntBASIC19.01■□□□□ 0.63
HOXC9P31274 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC9P31274 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC9P31274 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC9P31274 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC19.01■□□□□ 0.63
HOXC9P31274 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC19.01■□□□□ 0.63
HOXC9P31274 AC019109.1-201ENST00000401725 1874 ntBASIC19.01■□□□□ 0.63
HOXC9P31274 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC19■□□□□ 0.63
HOXC9P31274 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
HOXC9P31274 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 AC108734.2-201ENST00000420887 1069 ntBASIC19■□□□□ 0.63
HOXC9P31274 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC19■□□□□ 0.63
HOXC9P31274 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC19■□□□□ 0.63
HOXC9P31274 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC19■□□□□ 0.63
HOXC9P31274 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC19■□□□□ 0.63
HOXC9P31274 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC19■□□□□ 0.63
HOXC9P31274 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC19■□□□□ 0.63
HOXC9P31274 AC007952.5-201ENST00000572818 1486 ntBASIC19■□□□□ 0.63
HOXC9P31274 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 MYB-242ENST00000618728 3545 ntTSL 5 BASIC19■□□□□ 0.63
HOXC9P31274 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC19■□□□□ 0.63
HOXC9P31274 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC9P31274 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC9P31274 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC9P31274 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC9P31274 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC18.99■□□□□ 0.63
HOXC9P31274 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
HOXC9P31274 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC18.99■□□□□ 0.63
HOXC9P31274 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC9P31274 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC18.99■□□□□ 0.63
HOXC9P31274 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC9P31274 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC18.99■□□□□ 0.63
HOXC9P31274 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC9P31274 HINT1-205ENST00000508488 703 ntTSL 2 BASIC18.99■□□□□ 0.63
HOXC9P31274 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC18.99■□□□□ 0.63
HOXC9P31274 CMC2-204ENST00000562713 573 ntTSL 3 BASIC18.99■□□□□ 0.63
HOXC9P31274 CMC2-209ENST00000565108 399 ntTSL 2 BASIC18.99■□□□□ 0.63
HOXC9P31274 MIR4472-1-201ENST00000584349 80 ntBASIC18.99■□□□□ 0.63
HOXC9P31274 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC18.99■□□□□ 0.63
HOXC9P31274 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC18.99■□□□□ 0.63
HOXC9P31274 AC005357.2-202ENST00000590507 1060 ntBASIC18.99■□□□□ 0.63
HOXC9P31274 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC18.99■□□□□ 0.63
HOXC9P31274 AL118522.1-201ENST00000611368 560 ntBASIC18.99■□□□□ 0.63
HOXC9P31274 AC091769.1-201ENST00000619576 568 ntBASIC18.99■□□□□ 0.63
HOXC9P31274 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC9P31274 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC18.99■□□□□ 0.63
HOXC9P31274 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
HOXC9P31274 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
HOXC9P31274 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC9P31274 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC9P31274 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC9P31274 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC18.99■□□□□ 0.63
HOXC9P31274 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC18.99■□□□□ 0.63
HOXC9P31274 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC18.98■□□□□ 0.63
HOXC9P31274 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC9P31274 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC9P31274 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC18.98■□□□□ 0.63
HOXC9P31274 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC9P31274 MSANTD2P1-201ENST00000445341 1368 ntBASIC18.98■□□□□ 0.63
HOXC9P31274 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms