Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC15.37■□□□□ 0.05
BDNFP23560 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC15.37■□□□□ 0.05
BDNFP23560 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC15.37■□□□□ 0.05
BDNFP23560 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC15.37■□□□□ 0.05
BDNFP23560 SORD2P-201ENST00000558556 1069 ntBASIC15.37■□□□□ 0.05
BDNFP23560 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC15.37■□□□□ 0.05
BDNFP23560 AL606495.2-201ENST00000605867 535 ntBASIC15.37■□□□□ 0.05
BDNFP23560 AC097724.1-201ENST00000609581 426 ntBASIC15.37■□□□□ 0.05
BDNFP23560 CU633904.3-201ENST00000624042 1029 ntBASIC15.37■□□□□ 0.05
BDNFP23560 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
BDNFP23560 PPA1-206ENST00000625364 644 ntTSL 5 BASIC15.37■□□□□ 0.05
BDNFP23560 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC15.37■□□□□ 0.05
BDNFP23560 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
BDNFP23560 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC15.37■□□□□ 0.05
BDNFP23560 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
BDNFP23560 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC15.37■□□□□ 0.05
BDNFP23560 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC15.37■□□□□ 0.05
BDNFP23560 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
BDNFP23560 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
BDNFP23560 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
BDNFP23560 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
BDNFP23560 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC15.37■□□□□ 0.05
BDNFP23560 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
BDNFP23560 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
BDNFP23560 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC15.37■□□□□ 0.05
BDNFP23560 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
BDNFP23560 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
BDNFP23560 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
BDNFP23560 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.36■□□□□ 0.05
BDNFP23560 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
BDNFP23560 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BDNFP23560 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BDNFP23560 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
BDNFP23560 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC15.36■□□□□ 0.05
BDNFP23560 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BDNFP23560 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
BDNFP23560 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BDNFP23560 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
BDNFP23560 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
BDNFP23560 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
BDNFP23560 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
BDNFP23560 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
BDNFP23560 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
BDNFP23560 ISCA2P1-201ENST00000425548 448 ntBASIC15.36■□□□□ 0.05
BDNFP23560 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC15.36■□□□□ 0.05
BDNFP23560 OR2R1P-201ENST00000441404 914 ntBASIC15.36■□□□□ 0.05
BDNFP23560 AL596276.2-201ENST00000447525 331 ntBASIC15.36■□□□□ 0.05
BDNFP23560 AL133466.1-201ENST00000447582 150 ntBASIC15.36■□□□□ 0.05
BDNFP23560 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC15.36■□□□□ 0.05
BDNFP23560 AC245884.6-201ENST00000515672 1067 ntBASIC15.36■□□□□ 0.05
BDNFP23560 PGAM1P5-201ENST00000548011 764 ntBASIC15.36■□□□□ 0.05
BDNFP23560 CHMP4BP1-201ENST00000556017 588 ntBASIC15.36■□□□□ 0.05
BDNFP23560 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC15.36■□□□□ 0.05
BDNFP23560 AC124068.2-201ENST00000569473 1109 ntBASIC15.36■□□□□ 0.05
BDNFP23560 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.36■□□□□ 0.05
BDNFP23560 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
BDNFP23560 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
BDNFP23560 AHCYP4-201ENST00000419201 1315 ntBASIC15.36■□□□□ 0.05
BDNFP23560 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC15.36■□□□□ 0.05
BDNFP23560 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
BDNFP23560 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BDNFP23560 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
BDNFP23560 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
BDNFP23560 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.36■□□□□ 0.05
BDNFP23560 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
BDNFP23560 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.36■□□□□ 0.05
BDNFP23560 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BDNFP23560 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC15.36■□□□□ 0.05
BDNFP23560 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BDNFP23560 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC15.36■□□□□ 0.05
BDNFP23560 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
BDNFP23560 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
BDNFP23560 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
BDNFP23560 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BDNFP23560 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
BDNFP23560 AP001267.2-201ENST00000532619 2086 ntBASIC15.36■□□□□ 0.05
BDNFP23560 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
BDNFP23560 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.35■□□□□ 0.05
BDNFP23560 AC140479.7-201ENST00000636301 2332 ntBASIC15.35■□□□□ 0.05
BDNFP23560 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
BDNFP23560 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC15.35■□□□□ 0.05
BDNFP23560 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
BDNFP23560 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
BDNFP23560 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
BDNFP23560 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
BDNFP23560 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
BDNFP23560 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC15.35■□□□□ 0.05
BDNFP23560 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
BDNFP23560 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
BDNFP23560 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms