Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 MIR326-201ENST00000362220 95 ntBASIC14.28□□□□□ -0.12
VPS4AQ9UN37 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 NUS1P3-201ENST00000423502 862 ntBASIC14.28□□□□□ -0.12
VPS4AQ9UN37 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 AC012441.1-201ENST00000446669 685 ntBASIC14.28□□□□□ -0.12
VPS4AQ9UN37 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 OARD1-212ENST00000482515 832 ntTSL 2 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 AP001063.1-201ENST00000568332 529 ntBASIC14.28□□□□□ -0.12
VPS4AQ9UN37 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 AC006504.5-208ENST00000588784 2401 ntBASIC14.28□□□□□ -0.12
VPS4AQ9UN37 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 AL021578.1-201ENST00000613646 709 ntBASIC14.28□□□□□ -0.12
VPS4AQ9UN37 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 AC008687.7-202ENST00000637404 953 ntBASIC14.28□□□□□ -0.12
VPS4AQ9UN37 AL928921.2-201ENST00000641325 2442 ntBASIC14.28□□□□□ -0.12
VPS4AQ9UN37 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS4AQ9UN37 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 AC023090.2-201ENST00000625182 2110 ntBASIC14.27□□□□□ -0.12
VPS4AQ9UN37 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 AC087386.2-201ENST00000623212 4637 ntBASIC14.27□□□□□ -0.12
VPS4AQ9UN37 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
VPS4AQ9UN37 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 AC104306.2-201ENST00000451877 341 ntBASIC14.27□□□□□ -0.13
VPS4AQ9UN37 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 ZNF767P-206ENST00000513792 565 ntBASIC14.27□□□□□ -0.13
VPS4AQ9UN37 AC022447.6-201ENST00000515522 438 ntBASIC14.27□□□□□ -0.13
VPS4AQ9UN37 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 AC079328.1-201ENST00000560358 952 ntBASIC14.27□□□□□ -0.13
VPS4AQ9UN37 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 AC093813.1-201ENST00000605066 256 ntBASIC14.27□□□□□ -0.13
VPS4AQ9UN37 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS4AQ9UN37 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms