Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHFRQ96EP1 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHFRQ96EP1 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CHFRQ96EP1 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHFRQ96EP1 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.8□□□□□ -0.04
CHFRQ96EP1 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHFRQ96EP1 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CHFRQ96EP1 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHFRQ96EP1 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.8□□□□□ -0.04
CHFRQ96EP1 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.8□□□□□ -0.04
CHFRQ96EP1 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.8□□□□□ -0.04
CHFRQ96EP1 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHFRQ96EP1 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.8□□□□□ -0.04
CHFRQ96EP1 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHFRQ96EP1 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.79□□□□□ -0.04
CHFRQ96EP1 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.79□□□□□ -0.04
CHFRQ96EP1 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHFRQ96EP1 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHFRQ96EP1 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHFRQ96EP1 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CHFRQ96EP1 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC14.79□□□□□ -0.04
CHFRQ96EP1 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHFRQ96EP1 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CHFRQ96EP1 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CHFRQ96EP1 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CHFRQ96EP1 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC14.79□□□□□ -0.04
CHFRQ96EP1 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC14.79□□□□□ -0.04
CHFRQ96EP1 HIST2H2BA-201ENST00000412169 381 ntBASIC14.79□□□□□ -0.04
CHFRQ96EP1 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC14.79□□□□□ -0.04
CHFRQ96EP1 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC14.79□□□□□ -0.04
CHFRQ96EP1 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CHFRQ96EP1 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CHFRQ96EP1 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CHFRQ96EP1 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.79□□□□□ -0.04
CHFRQ96EP1 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC14.79□□□□□ -0.04
CHFRQ96EP1 MT3-203ENST00000565838 421 ntTSL 3 BASIC14.79□□□□□ -0.04
CHFRQ96EP1 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC14.79□□□□□ -0.04
CHFRQ96EP1 FAM45BP-202ENST00000592932 1624 ntBASIC14.79□□□□□ -0.04
CHFRQ96EP1 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CHFRQ96EP1 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CHFRQ96EP1 MARK2P16-201ENST00000605714 1723 ntBASIC14.79□□□□□ -0.04
CHFRQ96EP1 AC107464.3-201ENST00000609172 737 ntBASIC14.79□□□□□ -0.04
CHFRQ96EP1 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CHFRQ96EP1 AC087392.5-201ENST00000612517 489 ntBASIC14.79□□□□□ -0.04
CHFRQ96EP1 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC14.79□□□□□ -0.04
CHFRQ96EP1 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC14.79□□□□□ -0.04
CHFRQ96EP1 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHFRQ96EP1 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHFRQ96EP1 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC14.79□□□□□ -0.04
CHFRQ96EP1 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHFRQ96EP1 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.79□□□□□ -0.04
CHFRQ96EP1 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHFRQ96EP1 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CHFRQ96EP1 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.79□□□□□ -0.04
CHFRQ96EP1 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
CHFRQ96EP1 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.78□□□□□ -0.04
CHFRQ96EP1 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.78□□□□□ -0.04
CHFRQ96EP1 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.78□□□□□ -0.04
CHFRQ96EP1 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.78□□□□□ -0.04
CHFRQ96EP1 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.78□□□□□ -0.04
CHFRQ96EP1 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CHFRQ96EP1 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
CHFRQ96EP1 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC14.78□□□□□ -0.04
CHFRQ96EP1 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.78□□□□□ -0.04
CHFRQ96EP1 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CHFRQ96EP1 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC14.78□□□□□ -0.04
CHFRQ96EP1 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC14.78□□□□□ -0.04
CHFRQ96EP1 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CHFRQ96EP1 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
CHFRQ96EP1 AC012362.1-201ENST00000434906 739 ntBASIC14.78□□□□□ -0.04
CHFRQ96EP1 LYPLA2P1-203ENST00000447689 696 ntBASIC14.78□□□□□ -0.04
CHFRQ96EP1 PIN4P1-201ENST00000451079 396 ntBASIC14.78□□□□□ -0.04
CHFRQ96EP1 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC14.78□□□□□ -0.04
CHFRQ96EP1 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC14.78□□□□□ -0.04
CHFRQ96EP1 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC14.78□□□□□ -0.04
CHFRQ96EP1 AP000911.2-201ENST00000534330 502 ntBASIC14.78□□□□□ -0.04
CHFRQ96EP1 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CHFRQ96EP1 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC14.78□□□□□ -0.04
CHFRQ96EP1 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC14.78□□□□□ -0.04
CHFRQ96EP1 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms