Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 TSACC-203ENST00000368253 512 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC10.09□□□□□ -0.79
PRKDCP78527 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC10.09□□□□□ -0.79
PRKDCP78527 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC10.09□□□□□ -0.79
PRKDCP78527 AC099524.1-203ENST00000565272 756 ntTSL 5 BASIC10.09□□□□□ -0.79
PRKDCP78527 MIR4309-201ENST00000582498 83 ntBASIC10.09□□□□□ -0.79
PRKDCP78527 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC10.09□□□□□ -0.79
PRKDCP78527 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 CAPG-204ENST00000409724 1151 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 AL512422.2-201ENST00000426453 551 ntTSL 2 BASIC10.09□□□□□ -0.79
PRKDCP78527 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC10.09□□□□□ -0.79
PRKDCP78527 AC007405.2-203ENST00000455988 547 ntTSL 4 BASIC10.09□□□□□ -0.79
PRKDCP78527 IGKV3-11-201ENST00000483158 392 ntAPPRIS P1 BASIC10.09□□□□□ -0.79
PRKDCP78527 RPL29P2-201ENST00000488409 460 ntBASIC10.09□□□□□ -0.79
PRKDCP78527 FOS-205ENST00000555242 629 ntTSL 2 BASIC10.09□□□□□ -0.79
PRKDCP78527 MIR6749-201ENST00000617008 69 ntBASIC10.09□□□□□ -0.79
PRKDCP78527 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC10.08□□□□□ -0.8
PRKDCP78527 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
PRKDCP78527 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC10.08□□□□□ -0.8
PRKDCP78527 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
PRKDCP78527 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
PRKDCP78527 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
PRKDCP78527 SERPINB8P1-201ENST00000401898 377 ntBASIC10.08□□□□□ -0.8
PRKDCP78527 AL121994.1-201ENST00000413189 402 ntBASIC10.08□□□□□ -0.8
PRKDCP78527 AL049542.1-201ENST00000430231 278 ntBASIC10.08□□□□□ -0.8
PRKDCP78527 AL583804.1-201ENST00000448643 810 ntTSL 3 BASIC10.08□□□□□ -0.8
PRKDCP78527 CNN2P1-201ENST00000453616 918 ntBASIC10.08□□□□□ -0.8
PRKDCP78527 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC10.08□□□□□ -0.8
PRKDCP78527 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
PRKDCP78527 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
PRKDCP78527 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC10.08□□□□□ -0.8
PRKDCP78527 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC10.08□□□□□ -0.8
PRKDCP78527 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC10.08□□□□□ -0.8
PRKDCP78527 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
PRKDCP78527 LINC01658-201ENST00000320372 1578 ntTSL 2 BASIC10.08□□□□□ -0.8
PRKDCP78527 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC10.08□□□□□ -0.8
PRKDCP78527 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC10.08□□□□□ -0.8
PRKDCP78527 LINC00554-201ENST00000564841 3011 ntBASIC10.08□□□□□ -0.8
PRKDCP78527 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC10.08□□□□□ -0.8
PRKDCP78527 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC10.08□□□□□ -0.8
PRKDCP78527 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
PRKDCP78527 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
PRKDCP78527 TAGLN2-201ENST00000320307 709 ntAPPRIS P1 TSL 3 BASIC10.08□□□□□ -0.8
PRKDCP78527 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
PRKDCP78527 IGLV2-33-201ENST00000390302 412 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
PRKDCP78527 ACTG1P23-201ENST00000437653 1074 ntBASIC10.08□□□□□ -0.8
PRKDCP78527 AC104115.1-201ENST00000484005 623 ntBASIC10.08□□□□□ -0.8
PRKDCP78527 OARD1-214ENST00000486443 764 ntTSL 3 BASIC10.08□□□□□ -0.8
PRKDCP78527 AC010547.1-202ENST00000567341 230 ntTSL 2 BASIC10.08□□□□□ -0.8
PRKDCP78527 SOX2-OT-228ENST00000597828 864 ntTSL 5 BASIC10.08□□□□□ -0.8
PRKDCP78527 PDLIM2-218ENST00000614502 599 ntTSL 2 BASIC10.08□□□□□ -0.8
PRKDCP78527 AL139260.3-204ENST00000621281 609 ntAPPRIS P1 TSL 2 BASIC10.08□□□□□ -0.8
PRKDCP78527 Metazoa_SRP.168-201ENST00000621608 264 ntBASIC10.08□□□□□ -0.8
PRKDCP78527 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
PRKDCP78527 HYMAI-201ENST00000635591 3347 ntBASIC10.08□□□□□ -0.8
PRKDCP78527 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
PRKDCP78527 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC10.08□□□□□ -0.8
PRKDCP78527 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC10.08□□□□□ -0.8
PRKDCP78527 LINC02433-202ENST00000507108 1395 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
PRKDCP78527 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
PRKDCP78527 AC023024.2-201ENST00000623561 1993 ntBASIC10.08□□□□□ -0.8
PRKDCP78527 PGK1P2-201ENST00000431702 1214 ntBASIC10.08□□□□□ -0.8
PRKDCP78527 BICD1P1-201ENST00000457832 1222 ntBASIC10.08□□□□□ -0.8
PRKDCP78527 TCP10L-202ENST00000472557 732 ntAPPRIS ALT2 TSL 2 BASIC10.08□□□□□ -0.8
PRKDCP78527 TROAP-209ENST00000549275 348 ntAPPRIS ALT2 TSL 3 BASIC10.08□□□□□ -0.8
PRKDCP78527 TROAP-210ENST00000549534 839 ntAPPRIS ALT2 TSL 2 BASIC10.08□□□□□ -0.8
PRKDCP78527 AC140658.4-201ENST00000561990 352 ntBASIC10.08□□□□□ -0.8
PRKDCP78527 MED11-203ENST00000575284 652 ntTSL 3 BASIC10.08□□□□□ -0.8
PRKDCP78527 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
PRKDCP78527 PTN-202ENST00000393083 1599 ntTSL 5 BASIC10.08□□□□□ -0.8
PRKDCP78527 AC087481.3-201ENST00000602886 1894 ntBASIC10.08□□□□□ -0.8
PRKDCP78527 IMPDH1P5-201ENST00000439688 1540 ntBASIC10.08□□□□□ -0.8
PRKDCP78527 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
PRKDCP78527 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
PRKDCP78527 PES1P2-201ENST00000449745 1735 ntBASIC10.08□□□□□ -0.8
PRKDCP78527 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC10.08□□□□□ -0.8
PRKDCP78527 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 DLX4-206ENST00000611342 1662 ntBASIC10.07□□□□□ -0.8
PRKDCP78527 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
PRKDCP78527 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC10.07□□□□□ -0.8
PRKDCP78527 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC10.07□□□□□ -0.8
PRKDCP78527 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC10.07□□□□□ -0.8
PRKDCP78527 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 GRP-201ENST00000256857 848 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms