Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 AL355864.2-201ENST00000447420 863 ntBASIC12.92□□□□□ -0.34
CX3CR1P49238 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC12.92□□□□□ -0.34
CX3CR1P49238 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC12.92□□□□□ -0.34
CX3CR1P49238 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CX3CR1P49238 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC12.92□□□□□ -0.34
CX3CR1P49238 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CX3CR1P49238 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC12.92□□□□□ -0.34
CX3CR1P49238 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC12.92□□□□□ -0.34
CX3CR1P49238 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC12.92□□□□□ -0.34
CX3CR1P49238 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
CX3CR1P49238 COX11-202ENST00000571584 1108 ntTSL 2 BASIC12.92□□□□□ -0.34
CX3CR1P49238 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC12.92□□□□□ -0.34
CX3CR1P49238 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC12.92□□□□□ -0.34
CX3CR1P49238 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC12.92□□□□□ -0.34
CX3CR1P49238 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
CX3CR1P49238 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
CX3CR1P49238 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 INE2-201ENST00000630399 1874 ntBASIC12.92□□□□□ -0.34
CX3CR1P49238 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CX3CR1P49238 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CX3CR1P49238 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC12.92□□□□□ -0.34
CX3CR1P49238 AL138709.1-201ENST00000614840 1693 ntBASIC12.92□□□□□ -0.34
CX3CR1P49238 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC12.92□□□□□ -0.34
CX3CR1P49238 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC12.92□□□□□ -0.34
CX3CR1P49238 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC12.92□□□□□ -0.34
CX3CR1P49238 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC12.92□□□□□ -0.34
CX3CR1P49238 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 GSN-209ENST00000449733 2702 ntTSL 2 BASIC12.91□□□□□ -0.34
CX3CR1P49238 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
CX3CR1P49238 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC12.91□□□□□ -0.34
CX3CR1P49238 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
CX3CR1P49238 AC016397.2-201ENST00000624848 1985 ntBASIC12.91□□□□□ -0.34
CX3CR1P49238 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC12.91□□□□□ -0.34
CX3CR1P49238 AC215219.1-201ENST00000400706 1817 ntBASIC12.91□□□□□ -0.34
CX3CR1P49238 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC12.91□□□□□ -0.34
CX3CR1P49238 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 TPM3P8-201ENST00000330554 643 ntBASIC12.91□□□□□ -0.34
CX3CR1P49238 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC12.91□□□□□ -0.34
CX3CR1P49238 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 RPL28-203ENST00000428193 573 ntTSL 2 BASIC12.91□□□□□ -0.34
CX3CR1P49238 RPL28-204ENST00000431533 590 ntTSL 2 BASIC12.91□□□□□ -0.34
CX3CR1P49238 PNKD-204ENST00000436005 978 ntTSL 5 BASIC12.91□□□□□ -0.34
CX3CR1P49238 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 AC106760.1-201ENST00000508690 800 ntBASIC12.91□□□□□ -0.34
CX3CR1P49238 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 RPL28-207ENST00000558815 616 ntTSL 2 BASIC12.91□□□□□ -0.34
CX3CR1P49238 GREM1-201ENST00000560677 623 ntTSL 4 BASIC12.91□□□□□ -0.34
CX3CR1P49238 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC12.91□□□□□ -0.34
CX3CR1P49238 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC12.91□□□□□ -0.34
CX3CR1P49238 MIR6074-201ENST00000612054 107 ntBASIC12.91□□□□□ -0.34
CX3CR1P49238 RPSAP52-203ENST00000622976 1023 ntBASIC12.91□□□□□ -0.34
CX3CR1P49238 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC12.91□□□□□ -0.34
CX3CR1P49238 AC011474.4-201ENST00000623523 2076 ntBASIC12.91□□□□□ -0.34
CX3CR1P49238 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC12.91□□□□□ -0.34
CX3CR1P49238 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
CX3CR1P49238 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
CX3CR1P49238 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC12.91□□□□□ -0.34
CX3CR1P49238 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
CX3CR1P49238 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC12.91□□□□□ -0.34
CX3CR1P49238 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC12.91□□□□□ -0.34
CX3CR1P49238 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC12.91□□□□□ -0.34
CX3CR1P49238 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 CICP17-201ENST00000418553 2377 ntBASIC12.91□□□□□ -0.34
CX3CR1P49238 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
CX3CR1P49238 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CX3CR1P49238 TCAF1P1-201ENST00000414990 2232 ntBASIC12.9□□□□□ -0.34
CX3CR1P49238 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CR1P49238 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC12.9□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms