Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RB1P06400 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RB1P06400 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RB1P06400 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.29■□□□□ 0.04
RB1P06400 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
RB1P06400 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.29■□□□□ 0.04
RB1P06400 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
RB1P06400 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
RB1P06400 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 AC022532.1-201ENST00000624563 1728 ntBASIC15.29■□□□□ 0.04
RB1P06400 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.29■□□□□ 0.04
RB1P06400 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
RB1P06400 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
RB1P06400 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
RB1P06400 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 AC006987.1-201ENST00000413610 527 ntBASIC15.29■□□□□ 0.04
RB1P06400 OR51A9P-201ENST00000422578 911 ntBASIC15.29■□□□□ 0.04
RB1P06400 PPP1R2P4-201ENST00000424051 595 ntBASIC15.29■□□□□ 0.04
RB1P06400 AC093826.1-201ENST00000508655 993 ntBASIC15.29■□□□□ 0.04
RB1P06400 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC15.29■□□□□ 0.04
RB1P06400 SNORD3B-1-201ENST00000577988 758 ntBASIC15.29■□□□□ 0.04
RB1P06400 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
RB1P06400 AP005264.6-204ENST00000588436 719 ntBASIC15.29■□□□□ 0.04
RB1P06400 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC15.29■□□□□ 0.04
RB1P06400 PEBP1P2-201ENST00000603980 558 ntBASIC15.29■□□□□ 0.04
RB1P06400 AP003392.6-201ENST00000607709 325 ntBASIC15.29■□□□□ 0.04
RB1P06400 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
RB1P06400 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.29■□□□□ 0.04
RB1P06400 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.29■□□□□ 0.04
RB1P06400 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.29■□□□□ 0.04
RB1P06400 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.29■□□□□ 0.04
RB1P06400 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.29■□□□□ 0.04
RB1P06400 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RB1P06400 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.28■□□□□ 0.04
RB1P06400 AC015688.4-201ENST00000580780 1647 ntBASIC15.28■□□□□ 0.04
RB1P06400 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC15.28■□□□□ 0.04
RB1P06400 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.28■□□□□ 0.04
RB1P06400 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.28■□□□□ 0.04
RB1P06400 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
RB1P06400 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
RB1P06400 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC15.28■□□□□ 0.04
RB1P06400 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
RB1P06400 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC15.28■□□□□ 0.04
RB1P06400 LINC00265-2P-201ENST00000413372 782 ntBASIC15.28■□□□□ 0.04
RB1P06400 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC15.28■□□□□ 0.04
RB1P06400 PGAM1P12-201ENST00000505622 748 ntBASIC15.28■□□□□ 0.04
RB1P06400 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC15.28■□□□□ 0.04
RB1P06400 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC15.28■□□□□ 0.04
RB1P06400 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC15.28■□□□□ 0.04
RB1P06400 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC15.28■□□□□ 0.04
RB1P06400 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.28■□□□□ 0.04
RB1P06400 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 AL591122.2-201ENST00000624125 1853 ntBASIC15.28■□□□□ 0.04
RB1P06400 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RB1P06400 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC15.28■□□□□ 0.04
RB1P06400 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms