Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC12.9□□□□□ -0.34
RHBDD3Q9Y3P4 AC020910.6-201ENST00000623084 1459 ntBASIC12.9□□□□□ -0.34
RHBDD3Q9Y3P4 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
RHBDD3Q9Y3P4 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
RHBDD3Q9Y3P4 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC12.9□□□□□ -0.34
RHBDD3Q9Y3P4 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RHBDD3Q9Y3P4 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RHBDD3Q9Y3P4 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
RHBDD3Q9Y3P4 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.35
RHBDD3Q9Y3P4 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC12.9□□□□□ -0.35
RHBDD3Q9Y3P4 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 FO681548.1-201ENST00000455617 1132 ntBASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 SALL4P5-201ENST00000419001 1760 ntBASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RHBDD3Q9Y3P4 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 AP006294.1-201ENST00000415407 339 ntBASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 COX11-202ENST00000571584 1108 ntTSL 2 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 AC004466.1-201ENST00000599515 1080 ntBASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms