Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 MIR1202-201ENST00000408529 83 ntBASIC14.01□□□□□ -0.17
BRF2Q9HAW0 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 SKA2-202ENST00000437036 625 ntTSL 2 BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 TMEM198B-204ENST00000484016 896 ntBASIC14.01□□□□□ -0.17
BRF2Q9HAW0 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14.01□□□□□ -0.17
BRF2Q9HAW0 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 AC090643.2-201ENST00000623442 2029 ntBASIC14.01□□□□□ -0.17
BRF2Q9HAW0 CICP16-201ENST00000502609 2813 ntBASIC14.01□□□□□ -0.17
BRF2Q9HAW0 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
BRF2Q9HAW0 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
BRF2Q9HAW0 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14□□□□□ -0.17
BRF2Q9HAW0 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 KRT8P4-201ENST00000509735 1454 ntBASIC14□□□□□ -0.17
BRF2Q9HAW0 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
BRF2Q9HAW0 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC14□□□□□ -0.17
BRF2Q9HAW0 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
BRF2Q9HAW0 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14□□□□□ -0.17
BRF2Q9HAW0 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC14□□□□□ -0.17
BRF2Q9HAW0 BOLA2P3-201ENST00000404566 256 ntBASIC14□□□□□ -0.17
BRF2Q9HAW0 HNRNPA1P27-201ENST00000412087 955 ntBASIC14□□□□□ -0.17
BRF2Q9HAW0 RPL7P3-201ENST00000441388 714 ntBASIC14□□□□□ -0.17
BRF2Q9HAW0 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
BRF2Q9HAW0 PFN2-215ENST00000497148 743 ntTSL 4 BASIC14□□□□□ -0.17
BRF2Q9HAW0 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 IGHVIII-5-2-201ENST00000522505 261 ntBASIC14□□□□□ -0.17
BRF2Q9HAW0 AC079316.1-201ENST00000548397 411 ntBASIC14□□□□□ -0.17
BRF2Q9HAW0 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC14□□□□□ -0.17
BRF2Q9HAW0 AC106886.1-201ENST00000568660 600 ntBASIC14□□□□□ -0.17
BRF2Q9HAW0 PPY2P-201ENST00000582808 702 ntBASIC14□□□□□ -0.17
BRF2Q9HAW0 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 AL136301.1-201ENST00000615830 422 ntBASIC14□□□□□ -0.17
BRF2Q9HAW0 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
BRF2Q9HAW0 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC14□□□□□ -0.17
BRF2Q9HAW0 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
BRF2Q9HAW0 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.17
BRF2Q9HAW0 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
BRF2Q9HAW0 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BRF2Q9HAW0 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.99□□□□□ -0.17
BRF2Q9HAW0 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
BRF2Q9HAW0 DDC-213ENST00000617822 1809 ntTSL 3 BASIC13.99□□□□□ -0.17
BRF2Q9HAW0 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
BRF2Q9HAW0 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
BRF2Q9HAW0 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
BRF2Q9HAW0 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BRF2Q9HAW0 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BRF2Q9HAW0 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BRF2Q9HAW0 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
BRF2Q9HAW0 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
BRF2Q9HAW0 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BRF2Q9HAW0 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BRF2Q9HAW0 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms