Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC13.03□□□□□ -0.32
MMP28Q9H239 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC13.03□□□□□ -0.32
MMP28Q9H239 AC125807.1-201ENST00000483097 614 ntBASIC13.03□□□□□ -0.32
MMP28Q9H239 FXR1-221ENST00000491674 365 ntTSL 2 BASIC13.03□□□□□ -0.32
MMP28Q9H239 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
MMP28Q9H239 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC13.03□□□□□ -0.32
MMP28Q9H239 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC13.03□□□□□ -0.32
MMP28Q9H239 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC13.03□□□□□ -0.32
MMP28Q9H239 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC13.03□□□□□ -0.32
MMP28Q9H239 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC13.03□□□□□ -0.32
MMP28Q9H239 AL390955.2-201ENST00000603032 514 ntBASIC13.03□□□□□ -0.32
MMP28Q9H239 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC13.03□□□□□ -0.32
MMP28Q9H239 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
MMP28Q9H239 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC13.03□□□□□ -0.32
MMP28Q9H239 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
MMP28Q9H239 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
MMP28Q9H239 AC020910.6-201ENST00000623084 1459 ntBASIC13.03□□□□□ -0.32
MMP28Q9H239 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC13.03□□□□□ -0.32
MMP28Q9H239 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 AC131902.2-201ENST00000566892 2172 ntBASIC13.03□□□□□ -0.32
MMP28Q9H239 CETN4P-206ENST00000642099 2168 ntBASIC13.03□□□□□ -0.32
MMP28Q9H239 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
MMP28Q9H239 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
MMP28Q9H239 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
MMP28Q9H239 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC13.02□□□□□ -0.32
MMP28Q9H239 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
MMP28Q9H239 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
MMP28Q9H239 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
MMP28Q9H239 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
MMP28Q9H239 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
MMP28Q9H239 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
MMP28Q9H239 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
MMP28Q9H239 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
MMP28Q9H239 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC13.02□□□□□ -0.32
MMP28Q9H239 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
MMP28Q9H239 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
MMP28Q9H239 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC13.02□□□□□ -0.32
MMP28Q9H239 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
MMP28Q9H239 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
MMP28Q9H239 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
MMP28Q9H239 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
MMP28Q9H239 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
MMP28Q9H239 SPDYE17-201ENST00000412399 783 ntBASIC13.02□□□□□ -0.33
MMP28Q9H239 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC13.02□□□□□ -0.33
MMP28Q9H239 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 PPP6R2P1-201ENST00000450880 1275 ntBASIC13.02□□□□□ -0.33
MMP28Q9H239 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC13.02□□□□□ -0.33
MMP28Q9H239 RNA5SP421-201ENST00000516864 134 ntBASIC13.02□□□□□ -0.33
MMP28Q9H239 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC13.02□□□□□ -0.33
MMP28Q9H239 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC13.02□□□□□ -0.33
MMP28Q9H239 PRR29-209ENST00000582540 967 ntTSL 2 BASIC13.02□□□□□ -0.33
MMP28Q9H239 AC138761.1-201ENST00000584393 385 ntBASIC13.02□□□□□ -0.33
MMP28Q9H239 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC13.02□□□□□ -0.33
MMP28Q9H239 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC13.02□□□□□ -0.33
MMP28Q9H239 AL589739.1-201ENST00000607720 493 ntBASIC13.02□□□□□ -0.33
MMP28Q9H239 AL133215.2-201ENST00000609242 977 ntBASIC13.02□□□□□ -0.33
MMP28Q9H239 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC13.02□□□□□ -0.33
MMP28Q9H239 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
MMP28Q9H239 AC072061.1-201ENST00000569710 2234 ntBASIC13.02□□□□□ -0.33
MMP28Q9H239 SNX12-202ENST00000374274 2376 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC13.02□□□□□ -0.33
MMP28Q9H239 AGAP10P-201ENST00000454844 2418 ntBASIC13.02□□□□□ -0.33
MMP28Q9H239 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC13.02□□□□□ -0.33
MMP28Q9H239 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC13.02□□□□□ -0.33
MMP28Q9H239 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC13.02□□□□□ -0.33
MMP28Q9H239 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.02□□□□□ -0.33
MMP28Q9H239 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC13.02□□□□□ -0.33
MMP28Q9H239 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC13.02□□□□□ -0.33
MMP28Q9H239 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
MMP28Q9H239 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms