Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 AC126365.1-201ENST00000578585 1514 ntBASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 HARS-202ENST00000415192 1401 ntTSL 2 BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLIP3Q96DZ5 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 AGER-203ENST00000375065 665 ntTSL 2 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 RGS5-214ENST00000429865 754 ntTSL 3 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 APOA2-204ENST00000464492 530 ntTSL 3 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 MESTP3-201ENST00000503460 968 ntBASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 DIO1-215ENST00000610607 796 ntTSL 5 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC14.27□□□□□ -0.13
CLIP3Q96DZ5 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 HSPB1P2-201ENST00000448722 546 ntBASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 RNF41-210ENST00000552244 716 ntTSL 3 BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 AC244452.3-201ENST00000636814 210 ntBASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 CICP17-201ENST00000418553 2377 ntBASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 AC022532.1-201ENST00000624563 1728 ntBASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
CLIP3Q96DZ5 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms