Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 AC020910.6-201ENST00000623084 1459 ntBASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 DGCR5-201ENST00000399539 862 ntBASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 GCOM2-201ENST00000509133 1104 ntBASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 AC009486.1-201ENST00000569860 813 ntBASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 HSPA8P5-201ENST00000456928 2069 ntBASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC14.13□□□□□ -0.15
CLHC1Q8NHS4 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 PIN1P1-201ENST00000412108 996 ntBASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 AC245100.3-201ENST00000441281 285 ntBASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 SPCS2P1-201ENST00000561636 679 ntBASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 AL096865.1-201ENST00000606796 927 ntBASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 AC138696.2-201ENST00000607376 223 ntBASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.12□□□□□ -0.15
CLHC1Q8NHS4 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms