Protein–RNA interactions for Protein: Q8IVM7

LINC00346, Putative uncharacterized protein encoded by LINC00346, humanhuman

Predictions only

Length 164 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00346Q8IVM7 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC13.02□□□□□ -0.33
LINC00346Q8IVM7 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC13.02□□□□□ -0.33
LINC00346Q8IVM7 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00346Q8IVM7 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00346Q8IVM7 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC13.02□□□□□ -0.33
LINC00346Q8IVM7 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00346Q8IVM7 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00346Q8IVM7 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00346Q8IVM7 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00346Q8IVM7 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC13.02□□□□□ -0.33
LINC00346Q8IVM7 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
LINC00346Q8IVM7 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.02□□□□□ -0.33
LINC00346Q8IVM7 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
LINC00346Q8IVM7 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
LINC00346Q8IVM7 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00346Q8IVM7 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00346Q8IVM7 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00346Q8IVM7 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00346Q8IVM7 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
LINC00346Q8IVM7 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 AC011474.4-201ENST00000623523 2076 ntBASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 PNKD-204ENST00000436005 978 ntTSL 5 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 BCRP2-202ENST00000447763 634 ntBASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 BCRP6-201ENST00000510112 632 ntBASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 BCRP7-201ENST00000511549 544 ntBASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 GNRHR2-203ENST00000581100 1187 ntBASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 OS9-207ENST00000439210 1946 ntTSL 2 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00346Q8IVM7 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
LINC00346Q8IVM7 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00346Q8IVM7 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
LINC00346Q8IVM7 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00346Q8IVM7 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC13□□□□□ -0.33
LINC00346Q8IVM7 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC13□□□□□ -0.33
LINC00346Q8IVM7 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00346Q8IVM7 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00346Q8IVM7 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
LINC00346Q8IVM7 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00346Q8IVM7 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00346Q8IVM7 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00346Q8IVM7 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
LINC00346Q8IVM7 AC139712.1-201ENST00000378256 1875 ntBASIC13□□□□□ -0.33
LINC00346Q8IVM7 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC13□□□□□ -0.33
LINC00346Q8IVM7 GOLGA8VP-201ENST00000559009 1798 ntBASIC13□□□□□ -0.33
LINC00346Q8IVM7 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13□□□□□ -0.33
LINC00346Q8IVM7 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13□□□□□ -0.33
LINC00346Q8IVM7 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC13□□□□□ -0.33
LINC00346Q8IVM7 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00346Q8IVM7 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC13□□□□□ -0.33
LINC00346Q8IVM7 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC13□□□□□ -0.33
LINC00346Q8IVM7 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC13□□□□□ -0.33
LINC00346Q8IVM7 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00346Q8IVM7 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00346Q8IVM7 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00346Q8IVM7 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
LINC00346Q8IVM7 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00346Q8IVM7 ZBTB12BP-201ENST00000314232 1122 ntBASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms