Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC10.11□□□□□ -0.79
PRKDCP78527 NLK-203ENST00000582037 1503 ntTSL 2 BASIC10.11□□□□□ -0.79
PRKDCP78527 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC10.11□□□□□ -0.79
PRKDCP78527 TBC1D27-202ENST00000424239 1573 ntBASIC10.11□□□□□ -0.79
PRKDCP78527 RBMS3-210ENST00000456853 1394 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
PRKDCP78527 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
PRKDCP78527 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC10.11□□□□□ -0.79
PRKDCP78527 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
PRKDCP78527 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
PRKDCP78527 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC10.11□□□□□ -0.79
PRKDCP78527 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC10.11□□□□□ -0.79
PRKDCP78527 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
PRKDCP78527 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC10.1□□□□□ -0.79
PRKDCP78527 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC10.1□□□□□ -0.79
PRKDCP78527 SFPQP1-201ENST00000446621 1786 ntBASIC10.1□□□□□ -0.79
PRKDCP78527 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC10.1□□□□□ -0.79
PRKDCP78527 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC10.1□□□□□ -0.79
PRKDCP78527 AC027290.1-201ENST00000537827 484 ntTSL 5 BASIC10.1□□□□□ -0.79
PRKDCP78527 BCAR1P1-201ENST00000553953 636 ntBASIC10.1□□□□□ -0.79
PRKDCP78527 AC116914.2-201ENST00000571741 291 ntTSL 5 BASIC10.1□□□□□ -0.79
PRKDCP78527 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC10.1□□□□□ -0.79
PRKDCP78527 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 RPL10L-201ENST00000298283 812 ntAPPRIS P1 BASIC10.1□□□□□ -0.79
PRKDCP78527 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC10.1□□□□□ -0.79
PRKDCP78527 PDPN-208ENST00000509009 571 ntTSL 4 BASIC10.1□□□□□ -0.79
PRKDCP78527 AL157871.2-201ENST00000556212 552 ntTSL 3 BASIC10.1□□□□□ -0.79
PRKDCP78527 MIR5091-201ENST00000578707 93 ntBASIC10.1□□□□□ -0.79
PRKDCP78527 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC10.1□□□□□ -0.79
PRKDCP78527 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 CELP-203ENST00000624767 2414 ntTSL 5 BASIC10.1□□□□□ -0.79
PRKDCP78527 EDEM2-201ENST00000374491 1756 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC10.1□□□□□ -0.79
PRKDCP78527 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC10.1□□□□□ -0.79
PRKDCP78527 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC10.1□□□□□ -0.79
PRKDCP78527 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC10.1□□□□□ -0.79
PRKDCP78527 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC10.1□□□□□ -0.79
PRKDCP78527 ABCD3-201ENST00000315713 884 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 MT-ND6-201ENST00000361681 525 ntAPPRIS P1 BASIC10.1□□□□□ -0.79
PRKDCP78527 MRPL19-203ENST00000409374 1076 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
PRKDCP78527 SYS1-DBNDD2-202ENST00000452133 674 ntAPPRIS ALT2 TSL 3 BASIC10.1□□□□□ -0.79
PRKDCP78527 PARVG-208ENST00000466375 820 ntTSL 2 BASIC10.1□□□□□ -0.79
PRKDCP78527 RASGRF2-AS1-202ENST00000505694 535 ntTSL 3 BASIC10.1□□□□□ -0.79
PRKDCP78527 AC100858.1-201ENST00000514059 1228 ntBASIC10.1□□□□□ -0.79
PRKDCP78527 CDK7-211ENST00000514676 1164 ntTSL 5 BASIC10.1□□□□□ -0.79
PRKDCP78527 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC10.1□□□□□ -0.79
PRKDCP78527 SMIM22-207ENST00000589721 822 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 AL353581.1-201ENST00000606916 1224 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 Metazoa_SRP.122-201ENST00000610476 285 ntBASIC10.1□□□□□ -0.79
PRKDCP78527 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC10.1□□□□□ -0.79
PRKDCP78527 MEP1AP1-201ENST00000636082 1097 ntBASIC10.1□□□□□ -0.79
PRKDCP78527 FGF21-202ENST00000593756 1312 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 AC124944.3-201ENST00000607976 1304 ntBASIC10.1□□□□□ -0.79
PRKDCP78527 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 AC064850.1-201ENST00000413279 1398 ntBASIC10.1□□□□□ -0.79
PRKDCP78527 MPZL3-204ENST00000527472 1381 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC10.1□□□□□ -0.79
PRKDCP78527 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC10.1□□□□□ -0.79
PRKDCP78527 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
PRKDCP78527 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC10.1□□□□□ -0.79
PRKDCP78527 RPS6-201ENST00000315377 863 ntTSL 3 BASIC10.09□□□□□ -0.79
PRKDCP78527 LINC01494-201ENST00000419511 1011 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 KRT19P4-201ENST00000443208 943 ntBASIC10.09□□□□□ -0.79
PRKDCP78527 AC113398.1-201ENST00000464124 406 ntBASIC10.09□□□□□ -0.79
PRKDCP78527 AC008808.2-201ENST00000510349 569 ntTSL 3 BASIC10.09□□□□□ -0.79
PRKDCP78527 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC10.09□□□□□ -0.79
PRKDCP78527 AP001180.4-201ENST00000584167 823 ntTSL 3 BASIC10.09□□□□□ -0.79
PRKDCP78527 AC009779.7-201ENST00000609031 469 ntBASIC10.09□□□□□ -0.79
PRKDCP78527 AL158032.2-201ENST00000616818 195 ntBASIC10.09□□□□□ -0.79
PRKDCP78527 GARS-210ENST00000627489 324 ntTSL 4 BASIC10.09□□□□□ -0.79
PRKDCP78527 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC10.09□□□□□ -0.79
PRKDCP78527 PCDHA14-201ENST00000506751 2298 ntBASIC10.09□□□□□ -0.79
PRKDCP78527 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC10.09□□□□□ -0.79
PRKDCP78527 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 SGCA-202ENST00000344627 1057 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 PHBP3-201ENST00000412562 819 ntBASIC10.09□□□□□ -0.79
PRKDCP78527 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC10.09□□□□□ -0.79
PRKDCP78527 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
PRKDCP78527 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC10.09□□□□□ -0.79
PRKDCP78527 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC10.09□□□□□ -0.79
PRKDCP78527 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC10.09□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms