Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.77
MSH6P52701 AC022080.1-201ENST00000366255 781 ntBASIC19.83■□□□□ 0.77
MSH6P52701 BX679664.3-201ENST00000414070 555 ntBASIC19.83■□□□□ 0.77
MSH6P52701 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC19.83■□□□□ 0.77
MSH6P52701 RN7SL846P-201ENST00000467429 292 ntBASIC19.83■□□□□ 0.77
MSH6P52701 AC113935.1-201ENST00000471722 555 ntBASIC19.83■□□□□ 0.77
MSH6P52701 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC19.83■□□□□ 0.77
MSH6P52701 MIR2278-201ENST00000516344 96 ntBASIC19.83■□□□□ 0.77
MSH6P52701 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
MSH6P52701 SRP14-208ENST00000560773 468 ntTSL 3 BASIC19.83■□□□□ 0.77
MSH6P52701 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
MSH6P52701 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC19.83■□□□□ 0.77
MSH6P52701 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
MSH6P52701 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC19.83■□□□□ 0.77
MSH6P52701 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC19.83■□□□□ 0.77
MSH6P52701 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
MSH6P52701 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
MSH6P52701 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC19.83■□□□□ 0.77
MSH6P52701 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
MSH6P52701 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC19.83■□□□□ 0.77
MSH6P52701 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
MSH6P52701 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC19.83■□□□□ 0.77
MSH6P52701 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
MSH6P52701 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
MSH6P52701 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
MSH6P52701 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
MSH6P52701 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
MSH6P52701 AC087481.3-201ENST00000602886 1894 ntBASIC19.83■□□□□ 0.77
MSH6P52701 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC19.83■□□□□ 0.77
MSH6P52701 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC19.83■□□□□ 0.76
MSH6P52701 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSH6P52701 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
MSH6P52701 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSH6P52701 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSH6P52701 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSH6P52701 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSH6P52701 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC19.83■□□□□ 0.76
MSH6P52701 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
MSH6P52701 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
MSH6P52701 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC19.83■□□□□ 0.76
MSH6P52701 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC19.83■□□□□ 0.76
MSH6P52701 ALG1L7P-201ENST00000502317 768 ntBASIC19.83■□□□□ 0.76
MSH6P52701 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC19.83■□□□□ 0.76
MSH6P52701 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
MSH6P52701 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC19.83■□□□□ 0.76
MSH6P52701 AC004466.2-201ENST00000614749 516 ntBASIC19.83■□□□□ 0.76
MSH6P52701 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC19.83■□□□□ 0.76
MSH6P52701 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC19.83■□□□□ 0.76
MSH6P52701 MROH4P-201ENST00000431302 1578 ntBASIC19.82■□□□□ 0.76
MSH6P52701 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MSH6P52701 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
MSH6P52701 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC19.82■□□□□ 0.76
MSH6P52701 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH6P52701 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
MSH6P52701 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH6P52701 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
MSH6P52701 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MSH6P52701 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH6P52701 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH6P52701 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MSH6P52701 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH6P52701 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC19.82■□□□□ 0.76
MSH6P52701 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
MSH6P52701 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MSH6P52701 LINC00528-201ENST00000600723 2160 ntBASIC19.82■□□□□ 0.76
MSH6P52701 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH6P52701 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MSH6P52701 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MSH6P52701 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH6P52701 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
MSH6P52701 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
MSH6P52701 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
MSH6P52701 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
MSH6P52701 FAM21EP-201ENST00000417804 985 ntBASIC19.82■□□□□ 0.76
MSH6P52701 AC136604.1-202ENST00000425471 771 ntBASIC19.82■□□□□ 0.76
MSH6P52701 AC092573.1-201ENST00000433054 884 ntBASIC19.82■□□□□ 0.76
MSH6P52701 MAGEA7P-201ENST00000436482 942 ntBASIC19.82■□□□□ 0.76
MSH6P52701 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MSH6P52701 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC19.82■□□□□ 0.76
MSH6P52701 GPX3-202ENST00000517973 612 ntTSL 3 BASIC19.82■□□□□ 0.76
MSH6P52701 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC19.82■□□□□ 0.76
MSH6P52701 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC19.82■□□□□ 0.76
MSH6P52701 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC19.82■□□□□ 0.76
MSH6P52701 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC19.82■□□□□ 0.76
MSH6P52701 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC19.82■□□□□ 0.76
MSH6P52701 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC19.82■□□□□ 0.76
MSH6P52701 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC19.82■□□□□ 0.76
MSH6P52701 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH6P52701 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC19.82■□□□□ 0.76
MSH6P52701 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC19.81■□□□□ 0.76
MSH6P52701 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH6P52701 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH6P52701 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH6P52701 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MSH6P52701 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC19.81■□□□□ 0.76
MSH6P52701 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC19.81■□□□□ 0.76
MSH6P52701 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MSH6P52701 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH6P52701 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH6P52701 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms