Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC11.82□□□□□ -0.52
HOXA3O43365 ALG3P1-201ENST00000508806 1114 ntBASIC11.82□□□□□ -0.52
HOXA3O43365 GCOM2-201ENST00000509133 1104 ntBASIC11.82□□□□□ -0.52
HOXA3O43365 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC11.82□□□□□ -0.52
HOXA3O43365 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC11.82□□□□□ -0.52
HOXA3O43365 VPS18-202ENST00000558474 873 ntTSL 3 BASIC11.82□□□□□ -0.52
HOXA3O43365 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC11.82□□□□□ -0.52
HOXA3O43365 AC103988.2-201ENST00000561804 725 ntBASIC11.82□□□□□ -0.52
HOXA3O43365 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC11.82□□□□□ -0.52
HOXA3O43365 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC11.82□□□□□ -0.52
HOXA3O43365 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
HOXA3O43365 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC11.82□□□□□ -0.52
HOXA3O43365 BX088702.1-201ENST00000610784 235 ntBASIC11.82□□□□□ -0.52
HOXA3O43365 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA3O43365 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA3O43365 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA3O43365 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
HOXA3O43365 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA3O43365 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA3O43365 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC11.82□□□□□ -0.52
HOXA3O43365 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA3O43365 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA3O43365 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA3O43365 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA3O43365 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA3O43365 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA3O43365 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA3O43365 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXA3O43365 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXA3O43365 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA3O43365 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA3O43365 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA3O43365 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
HOXA3O43365 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA3O43365 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXA3O43365 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
HOXA3O43365 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA3O43365 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXA3O43365 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXA3O43365 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXA3O43365 SNX18-202ENST00000343017 3140 ntBASIC11.82□□□□□ -0.52
HOXA3O43365 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA3O43365 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
HOXA3O43365 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
HOXA3O43365 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA3O43365 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA3O43365 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC11.81□□□□□ -0.52
HOXA3O43365 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA3O43365 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
HOXA3O43365 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
HOXA3O43365 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA3O43365 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
HOXA3O43365 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC11.81□□□□□ -0.52
HOXA3O43365 PDIA3P2-201ENST00000428073 158 ntBASIC11.81□□□□□ -0.52
HOXA3O43365 RPS2P36-201ENST00000456516 831 ntBASIC11.81□□□□□ -0.52
HOXA3O43365 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA3O43365 AC116345.2-201ENST00000512837 523 ntBASIC11.81□□□□□ -0.52
HOXA3O43365 POU5F1P2-201ENST00000521750 823 ntBASIC11.81□□□□□ -0.52
HOXA3O43365 FADS2-212ENST00000522639 360 ntTSL 5 BASIC11.81□□□□□ -0.52
HOXA3O43365 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC11.81□□□□□ -0.52
HOXA3O43365 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC11.81□□□□□ -0.52
HOXA3O43365 FADS2-215ENST00000574708 385 ntTSL 3 BASIC11.81□□□□□ -0.52
HOXA3O43365 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC11.81□□□□□ -0.52
HOXA3O43365 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC11.81□□□□□ -0.52
HOXA3O43365 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA3O43365 AC128714.1-201ENST00000637035 887 ntBASIC11.81□□□□□ -0.52
HOXA3O43365 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC11.81□□□□□ -0.52
HOXA3O43365 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA3O43365 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC11.81□□□□□ -0.52
HOXA3O43365 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA3O43365 LCK-206ENST00000373564 2137 ntTSL 5 BASIC11.81□□□□□ -0.52
HOXA3O43365 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
HOXA3O43365 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA3O43365 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
HOXA3O43365 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
HOXA3O43365 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC11.81□□□□□ -0.52
HOXA3O43365 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HOXA3O43365 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms