Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
VPS29Q9UBQ0 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.15
VPS29Q9UBQ0 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
VPS29Q9UBQ0 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 CNN2P8-201ENST00000421872 913 ntBASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 AP003171.2-201ENST00000528208 925 ntBASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 CICP16-201ENST00000502609 2813 ntBASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS29Q9UBQ0 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 AL354989.2-201ENST00000435838 1540 ntBASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 ARSEP1-201ENST00000420443 635 ntBASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 TMEM14DP-201ENST00000422205 345 ntBASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 AC007551.1-201ENST00000457394 519 ntBASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 AP005018.1-201ENST00000525475 301 ntBASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 AC138951.2-201ENST00000623455 1161 ntBASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS29Q9UBQ0 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms