Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC18.63■□□□□ 0.57
COL18A1P39060 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC18.63■□□□□ 0.57
COL18A1P39060 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL18A1P39060 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL18A1P39060 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC18.63■□□□□ 0.57
COL18A1P39060 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC18.63■□□□□ 0.57
COL18A1P39060 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC18.63■□□□□ 0.57
COL18A1P39060 HMGA1P1-201ENST00000415560 1062 ntBASIC18.63■□□□□ 0.57
COL18A1P39060 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC18.63■□□□□ 0.57
COL18A1P39060 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL18A1P39060 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC18.63■□□□□ 0.57
COL18A1P39060 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL18A1P39060 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL18A1P39060 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC18.63■□□□□ 0.57
COL18A1P39060 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL18A1P39060 FBXO36P1-201ENST00000579006 471 ntBASIC18.63■□□□□ 0.57
COL18A1P39060 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC18.63■□□□□ 0.57
COL18A1P39060 AC113385.2-201ENST00000614465 762 ntBASIC18.63■□□□□ 0.57
COL18A1P39060 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL18A1P39060 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
COL18A1P39060 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL18A1P39060 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL18A1P39060 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
COL18A1P39060 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL18A1P39060 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
COL18A1P39060 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL18A1P39060 AC105917.1-201ENST00000506637 2539 ntBASIC18.62■□□□□ 0.57
COL18A1P39060 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL18A1P39060 AC023157.3-201ENST00000619086 2088 ntBASIC18.62■□□□□ 0.57
COL18A1P39060 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC18.62■□□□□ 0.57
COL18A1P39060 MYB-242ENST00000618728 3545 ntTSL 5 BASIC18.62■□□□□ 0.57
COL18A1P39060 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL18A1P39060 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL18A1P39060 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL18A1P39060 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.62■□□□□ 0.57
COL18A1P39060 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL18A1P39060 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
COL18A1P39060 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL18A1P39060 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL18A1P39060 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC18.62■□□□□ 0.57
COL18A1P39060 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL18A1P39060 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC18.62■□□□□ 0.57
COL18A1P39060 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC18.62■□□□□ 0.57
COL18A1P39060 BX322534.1-201ENST00000635574 241 ntBASIC18.62■□□□□ 0.57
COL18A1P39060 AC215524.1-201ENST00000635696 241 ntBASIC18.62■□□□□ 0.57
COL18A1P39060 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC18.62■□□□□ 0.57
COL18A1P39060 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL18A1P39060 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL18A1P39060 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC18.62■□□□□ 0.57
COL18A1P39060 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL18A1P39060 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL18A1P39060 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL18A1P39060 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL18A1P39060 SALL4P6-201ENST00000429385 1691 ntBASIC18.61■□□□□ 0.57
COL18A1P39060 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.61■□□□□ 0.57
COL18A1P39060 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC18.61■□□□□ 0.57
COL18A1P39060 AC092810.2-201ENST00000431570 362 ntBASIC18.61■□□□□ 0.57
COL18A1P39060 PGK1P2-201ENST00000431702 1214 ntBASIC18.61■□□□□ 0.57
COL18A1P39060 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
COL18A1P39060 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC18.61■□□□□ 0.57
COL18A1P39060 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC18.61■□□□□ 0.57
COL18A1P39060 AC120498.7-201ENST00000562876 330 ntBASIC18.61■□□□□ 0.57
COL18A1P39060 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL18A1P39060 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL18A1P39060 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
COL18A1P39060 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL18A1P39060 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL18A1P39060 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
COL18A1P39060 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL18A1P39060 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL18A1P39060 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL18A1P39060 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC18.61■□□□□ 0.57
COL18A1P39060 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL18A1P39060 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL18A1P39060 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
COL18A1P39060 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL18A1P39060 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL18A1P39060 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL18A1P39060 HNRNPA1P21-201ENST00000424115 961 ntBASIC18.6■□□□□ 0.57
COL18A1P39060 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL18A1P39060 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC18.6■□□□□ 0.57
COL18A1P39060 AC079414.2-201ENST00000567157 1104 ntBASIC18.6■□□□□ 0.57
COL18A1P39060 AC004686.1-201ENST00000605113 538 ntBASIC18.6■□□□□ 0.57
COL18A1P39060 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC18.6■□□□□ 0.57
COL18A1P39060 AC020904.3-201ENST00000624199 442 ntBASIC18.6■□□□□ 0.57
COL18A1P39060 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC18.6■□□□□ 0.57
COL18A1P39060 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL18A1P39060 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
COL18A1P39060 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL18A1P39060 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC18.6■□□□□ 0.57
COL18A1P39060 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC18.6■□□□□ 0.57
COL18A1P39060 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL18A1P39060 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
COL18A1P39060 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL18A1P39060 AC005722.1-201ENST00000431878 964 ntBASIC18.6■□□□□ 0.57
COL18A1P39060 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC18.6■□□□□ 0.57
COL18A1P39060 HNRNPA3P6-201ENST00000472163 1006 ntBASIC18.6■□□□□ 0.57
COL18A1P39060 AC023906.1-201ENST00000486386 453 ntBASIC18.6■□□□□ 0.57
COL18A1P39060 AC092612.1-201ENST00000514501 998 ntBASIC18.6■□□□□ 0.57
COL18A1P39060 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 463.4 ms