Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 SEZ6L-201ENST00000248933 3248 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 SEZ6L-210ENST00000629590 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 HPD-204ENST00000543163 1709 ntTSL 5 BASIC14.06□□□□□ -0.16
MSX2P35548 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.06□□□□□ -0.16
MSX2P35548 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
MSX2P35548 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC14.06□□□□□ -0.16
MSX2P35548 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 LINC00567-201ENST00000569854 3409 ntBASIC14.06□□□□□ -0.16
MSX2P35548 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.06□□□□□ -0.16
MSX2P35548 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
MSX2P35548 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX2P35548 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
MSX2P35548 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 AL138799.1-201ENST00000448213 1675 ntBASIC14.05□□□□□ -0.16
MSX2P35548 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX2P35548 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX2P35548 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX2P35548 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.05□□□□□ -0.16
MSX2P35548 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.05□□□□□ -0.16
MSX2P35548 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.05□□□□□ -0.16
MSX2P35548 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC14.05□□□□□ -0.16
MSX2P35548 SDHAP3-202ENST00000515467 728 ntBASIC14.05□□□□□ -0.16
MSX2P35548 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 AC005829.1-201ENST00000570002 483 ntBASIC14.05□□□□□ -0.16
MSX2P35548 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.05□□□□□ -0.16
MSX2P35548 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
MSX2P35548 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.05□□□□□ -0.16
MSX2P35548 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
MSX2P35548 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
MSX2P35548 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
MSX2P35548 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
MSX2P35548 DRD5P1-201ENST00000456605 1438 ntBASIC14.05□□□□□ -0.16
MSX2P35548 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX2P35548 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MSX2P35548 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX2P35548 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC14.05□□□□□ -0.16
MSX2P35548 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC14.05□□□□□ -0.16
MSX2P35548 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC14.05□□□□□ -0.16
MSX2P35548 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX2P35548 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC14.05□□□□□ -0.16
MSX2P35548 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.05□□□□□ -0.16
MSX2P35548 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
MSX2P35548 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX2P35548 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC14.05□□□□□ -0.16
MSX2P35548 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.04□□□□□ -0.16
MSX2P35548 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.04□□□□□ -0.16
MSX2P35548 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
MSX2P35548 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 CARS-214ENST00000529772 2637 ntTSL 2 BASIC14.04□□□□□ -0.16
MSX2P35548 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
MSX2P35548 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 NCLP1-201ENST00000445357 1963 ntBASIC14.04□□□□□ -0.16
MSX2P35548 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
MSX2P35548 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC14.04□□□□□ -0.16
MSX2P35548 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
MSX2P35548 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
MSX2P35548 TEX30-205ENST00000376029 959 ntTSL 2 BASIC14.04□□□□□ -0.16
MSX2P35548 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX2P35548 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms