Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC16.41■□□□□ 0.22
CIITAP33076 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.41■□□□□ 0.22
CIITAP33076 AL133338.1-201ENST00000565695 1517 ntBASIC16.41■□□□□ 0.22
CIITAP33076 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.41■□□□□ 0.22
CIITAP33076 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.41■□□□□ 0.22
CIITAP33076 AL157791.1-201ENST00000553667 1699 ntBASIC16.41■□□□□ 0.22
CIITAP33076 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CIITAP33076 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CIITAP33076 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CIITAP33076 JTB-202ENST00000356648 1040 ntTSL 2 BASIC16.41■□□□□ 0.22
CIITAP33076 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CIITAP33076 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
CIITAP33076 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC16.41■□□□□ 0.22
CIITAP33076 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC16.41■□□□□ 0.22
CIITAP33076 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC16.41■□□□□ 0.22
CIITAP33076 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC16.41■□□□□ 0.22
CIITAP33076 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC16.41■□□□□ 0.22
CIITAP33076 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC16.41■□□□□ 0.22
CIITAP33076 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC16.41■□□□□ 0.22
CIITAP33076 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CIITAP33076 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC16.41■□□□□ 0.22
CIITAP33076 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
CIITAP33076 AC021016.3-201ENST00000608367 477 ntBASIC16.41■□□□□ 0.22
CIITAP33076 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC16.41■□□□□ 0.22
CIITAP33076 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CIITAP33076 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CIITAP33076 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CIITAP33076 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CIITAP33076 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC16.41■□□□□ 0.22
CIITAP33076 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CIITAP33076 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CIITAP33076 KRT8P21-201ENST00000430398 1491 ntBASIC16.41■□□□□ 0.22
CIITAP33076 LAP3P2-201ENST00000454686 1454 ntBASIC16.41■□□□□ 0.22
CIITAP33076 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CIITAP33076 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CIITAP33076 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC16.41■□□□□ 0.22
CIITAP33076 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CIITAP33076 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CIITAP33076 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC16.4■□□□□ 0.22
CIITAP33076 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
CIITAP33076 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 LBH-202ENST00000401506 485 ntTSL 3 BASIC16.4■□□□□ 0.22
CIITAP33076 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC16.4■□□□□ 0.22
CIITAP33076 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC16.4■□□□□ 0.22
CIITAP33076 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC16.4■□□□□ 0.22
CIITAP33076 AL596276.2-201ENST00000447525 331 ntBASIC16.4■□□□□ 0.22
CIITAP33076 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC16.4■□□□□ 0.22
CIITAP33076 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC16.4■□□□□ 0.22
CIITAP33076 MIR3188-201ENST00000583494 85 ntBASIC16.4■□□□□ 0.22
CIITAP33076 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC16.4■□□□□ 0.22
CIITAP33076 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
CIITAP33076 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CIITAP33076 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC16.4■□□□□ 0.22
CIITAP33076 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC16.4■□□□□ 0.22
CIITAP33076 AL591471.1-201ENST00000621855 229 ntBASIC16.4■□□□□ 0.22
CIITAP33076 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
CIITAP33076 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC16.4■□□□□ 0.22
CIITAP33076 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.4■□□□□ 0.22
CIITAP33076 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
CIITAP33076 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC16.4■□□□□ 0.22
CIITAP33076 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CIITAP33076 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC16.39■□□□□ 0.22
CIITAP33076 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CIITAP33076 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CIITAP33076 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC16.39■□□□□ 0.21
CIITAP33076 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CIITAP33076 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC16.39■□□□□ 0.21
CIITAP33076 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CIITAP33076 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CIITAP33076 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CIITAP33076 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CIITAP33076 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CIITAP33076 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CIITAP33076 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
CIITAP33076 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CIITAP33076 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CIITAP33076 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CIITAP33076 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CIITAP33076 ACTG1P2-201ENST00000415776 1125 ntBASIC16.39■□□□□ 0.21
CIITAP33076 ACTG1P11-201ENST00000425411 1125 ntBASIC16.39■□□□□ 0.21
CIITAP33076 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms