Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 Metazoa_SRP.168-201ENST00000621608 264 ntBASIC14.67□□□□□ -0.06
COL6A3P12111 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.67□□□□□ -0.06
COL6A3P12111 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A3P12111 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC14.66□□□□□ -0.06
COL6A3P12111 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
COL6A3P12111 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A3P12111 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A3P12111 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A3P12111 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A3P12111 HSD3BP1-201ENST00000286193 1111 ntBASIC14.66□□□□□ -0.06
COL6A3P12111 FOLR1-204ENST00000393681 1061 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A3P12111 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC14.66□□□□□ -0.06
COL6A3P12111 TSPAN9-IT1-201ENST00000539784 562 ntTSL 4 BASIC14.66□□□□□ -0.06
COL6A3P12111 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC14.66□□□□□ -0.06
COL6A3P12111 RN7SL455P-201ENST00000580629 282 ntBASIC14.66□□□□□ -0.06
COL6A3P12111 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A3P12111 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC14.66□□□□□ -0.06
COL6A3P12111 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC14.66□□□□□ -0.06
COL6A3P12111 AC106872.9-201ENST00000512437 1393 ntBASIC14.66□□□□□ -0.06
COL6A3P12111 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
COL6A3P12111 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC14.66□□□□□ -0.06
COL6A3P12111 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A3P12111 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.66□□□□□ -0.06
COL6A3P12111 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.66□□□□□ -0.06
COL6A3P12111 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC14.66□□□□□ -0.06
COL6A3P12111 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A3P12111 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A3P12111 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.66□□□□□ -0.06
COL6A3P12111 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.66□□□□□ -0.06
COL6A3P12111 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.66□□□□□ -0.06
COL6A3P12111 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A3P12111 PGAP2-219ENST00000479072 894 ntTSL 3 BASIC14.66□□□□□ -0.06
COL6A3P12111 AC010442.2-201ENST00000509301 407 ntBASIC14.66□□□□□ -0.06
COL6A3P12111 AC090589.3-201ENST00000524412 574 ntTSL 5 BASIC14.66□□□□□ -0.06
COL6A3P12111 AC078923.1-201ENST00000552856 748 ntTSL 3 BASIC14.66□□□□□ -0.06
COL6A3P12111 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC14.66□□□□□ -0.06
COL6A3P12111 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC14.66□□□□□ -0.06
COL6A3P12111 RAB11B-205ENST00000601897 577 ntTSL 3 BASIC14.66□□□□□ -0.06
COL6A3P12111 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.66□□□□□ -0.06
COL6A3P12111 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A3P12111 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A3P12111 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.66□□□□□ -0.06
COL6A3P12111 LINC01137-201ENST00000424989 1395 ntTSL 2 BASIC14.66□□□□□ -0.06
COL6A3P12111 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
COL6A3P12111 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A3P12111 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A3P12111 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A3P12111 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.66□□□□□ -0.06
COL6A3P12111 IMPDH1P5-201ENST00000439688 1540 ntBASIC14.66□□□□□ -0.06
COL6A3P12111 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A3P12111 AL603832.2-201ENST00000566195 2125 ntBASIC14.65□□□□□ -0.06
COL6A3P12111 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.65□□□□□ -0.06
COL6A3P12111 FAM96A-202ENST00000380290 826 ntTSL 2 BASIC14.65□□□□□ -0.06
COL6A3P12111 MESTP4-201ENST00000412333 1204 ntBASIC14.65□□□□□ -0.06
COL6A3P12111 AC069277.1-201ENST00000433639 1083 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A3P12111 LINC00618-201ENST00000435624 700 ntTSL 5 BASIC14.65□□□□□ -0.06
COL6A3P12111 SPATA24-204ENST00000507779 606 ntTSL 5 BASIC14.65□□□□□ -0.06
COL6A3P12111 AC139493.2-202ENST00000510155 544 ntTSL 3 BASIC14.65□□□□□ -0.06
COL6A3P12111 AC100858.1-201ENST00000514059 1228 ntBASIC14.65□□□□□ -0.06
COL6A3P12111 MIR2277-201ENST00000515916 93 ntBASIC14.65□□□□□ -0.06
COL6A3P12111 AC005920.4-201ENST00000573301 492 ntTSL 4 BASIC14.65□□□□□ -0.06
COL6A3P12111 RBM4-202ENST00000396053 1337 ntTSL 2 BASIC14.65□□□□□ -0.06
COL6A3P12111 NBR2-202ENST00000460115 1344 ntTSL 2 BASIC14.65□□□□□ -0.06
COL6A3P12111 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
COL6A3P12111 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC14.65□□□□□ -0.06
COL6A3P12111 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.65□□□□□ -0.06
COL6A3P12111 AC024909.3-201ENST00000611513 2257 ntBASIC14.65□□□□□ -0.06
COL6A3P12111 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.65□□□□□ -0.06
COL6A3P12111 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC14.65□□□□□ -0.06
COL6A3P12111 TIMM23B-201ENST00000374098 1142 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
COL6A3P12111 SERPINB8P1-201ENST00000401898 377 ntBASIC14.65□□□□□ -0.06
COL6A3P12111 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC14.65□□□□□ -0.06
COL6A3P12111 AC010086.2-201ENST00000428616 226 ntBASIC14.65□□□□□ -0.06
COL6A3P12111 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A3P12111 AC142381.4-201ENST00000566806 702 ntTSL 3 BASIC14.65□□□□□ -0.06
COL6A3P12111 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC14.65□□□□□ -0.06
COL6A3P12111 AC142086.5-201ENST00000567619 702 ntTSL 5 BASIC14.65□□□□□ -0.06
COL6A3P12111 PCTP-206ENST00000573500 919 ntTSL 3 BASIC14.65□□□□□ -0.06
COL6A3P12111 MED11-203ENST00000575284 652 ntTSL 3 BASIC14.65□□□□□ -0.06
COL6A3P12111 RPL26-206ENST00000582556 763 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
COL6A3P12111 ZNF850-201ENST00000589390 523 ntTSL 3 BASIC14.65□□□□□ -0.06
COL6A3P12111 FAHD2A-204ENST00000447036 1366 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
COL6A3P12111 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC14.65□□□□□ -0.06
COL6A3P12111 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.65□□□□□ -0.06
COL6A3P12111 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A3P12111 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.65□□□□□ -0.06
COL6A3P12111 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A3P12111 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC14.65□□□□□ -0.06
COL6A3P12111 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A3P12111 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A3P12111 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
COL6A3P12111 TPI1P2-201ENST00000491343 752 ntBASIC14.65□□□□□ -0.06
COL6A3P12111 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
COL6A3P12111 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A3P12111 FXYD3-212ENST00000605550 590 ntTSL 4 BASIC14.65□□□□□ -0.06
COL6A3P12111 CACNA1G-AS1-202ENST00000505793 1433 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL6A3P12111 KRT8P43-201ENST00000406052 1458 ntBASIC14.65□□□□□ -0.06
COL6A3P12111 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
COL6A3P12111 ENO3-201ENST00000323997 1521 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.07
COL6A3P12111 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC14.65□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms