Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SIX3O95343 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SIX3O95343 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SIX3O95343 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SIX3O95343 RN7SKP175-201ENST00000408472 289 ntBASIC14.37□□□□□ -0.11
SIX3O95343 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.37□□□□□ -0.11
SIX3O95343 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.37□□□□□ -0.11
SIX3O95343 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC14.37□□□□□ -0.11
SIX3O95343 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.37□□□□□ -0.11
SIX3O95343 AP001889.1-201ENST00000525414 633 ntBASIC14.37□□□□□ -0.11
SIX3O95343 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SIX3O95343 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.37□□□□□ -0.11
SIX3O95343 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.37□□□□□ -0.11
SIX3O95343 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
SIX3O95343 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SIX3O95343 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SIX3O95343 AP000593.2-201ENST00000542775 1433 ntBASIC14.37□□□□□ -0.11
SIX3O95343 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SIX3O95343 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SIX3O95343 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
SIX3O95343 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SIX3O95343 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
SIX3O95343 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SIX3O95343 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SIX3O95343 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SIX3O95343 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SIX3O95343 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SIX3O95343 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.37□□□□□ -0.11
SIX3O95343 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC14.36□□□□□ -0.11
SIX3O95343 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC14.36□□□□□ -0.11
SIX3O95343 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 AL035633.1-201ENST00000406139 838 ntBASIC14.36□□□□□ -0.11
SIX3O95343 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.36□□□□□ -0.11
SIX3O95343 AL590640.2-201ENST00000457038 527 ntBASIC14.36□□□□□ -0.11
SIX3O95343 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.36□□□□□ -0.11
SIX3O95343 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.36□□□□□ -0.11
SIX3O95343 SORD2P-201ENST00000558556 1069 ntBASIC14.36□□□□□ -0.11
SIX3O95343 AC106820.3-201ENST00000561653 397 ntBASIC14.36□□□□□ -0.11
SIX3O95343 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.36□□□□□ -0.11
SIX3O95343 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.36□□□□□ -0.11
SIX3O95343 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
SIX3O95343 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
SIX3O95343 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC14.36□□□□□ -0.11
SIX3O95343 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.36□□□□□ -0.11
SIX3O95343 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.36□□□□□ -0.11
SIX3O95343 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.36□□□□□ -0.11
SIX3O95343 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC14.36□□□□□ -0.11
SIX3O95343 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 LSS-211ENST00000522411 2523 ntTSL 2 BASIC14.36□□□□□ -0.11
SIX3O95343 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
SIX3O95343 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
SIX3O95343 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SIX3O95343 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.36□□□□□ -0.11
SIX3O95343 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC14.35□□□□□ -0.11
SIX3O95343 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC14.35□□□□□ -0.11
SIX3O95343 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
SIX3O95343 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.35□□□□□ -0.11
SIX3O95343 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
SIX3O95343 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC14.35□□□□□ -0.11
SIX3O95343 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC14.35□□□□□ -0.11
SIX3O95343 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SIX3O95343 TPM3P8-201ENST00000330554 643 ntBASIC14.35□□□□□ -0.11
SIX3O95343 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
SIX3O95343 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms