Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 AC098614.1-201ENST00000368528 745 ntBASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 R3HDM2P2-201ENST00000401880 2116 ntBASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 PUDPP3-201ENST00000445368 636 ntBASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 AC106760.1-201ENST00000508690 800 ntBASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 AP001889.1-201ENST00000525414 633 ntBASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 AC025279.2-201ENST00000569730 653 ntBASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 COX11-202ENST00000571584 1108 ntTSL 2 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 GNRHR2-203ENST00000581100 1187 ntBASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 AL355385.1-201ENST00000606123 409 ntBASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 ETV2-208ENST00000621247 941 ntTSL 5 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 OS9-207ENST00000439210 1946 ntTSL 2 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 AC011498.7-201ENST00000624986 2027 ntBASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 C1R-201ENST00000535233 2211 ntTSL 2 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 HPD-204ENST00000543163 1709 ntTSL 5 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 AC005840.4-201ENST00000541242 2494 ntBASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 TPM3P8-201ENST00000330554 643 ntBASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 AC005229.1-201ENST00000392885 409 ntBASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 HCG24-202ENST00000414398 717 ntTSL 3 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 WDR53-203ENST00000429115 683 ntTSL 2 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 AL355864.2-201ENST00000447420 863 ntBASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 AC106820.3-201ENST00000561653 397 ntBASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 PIGL-212ENST00000581006 554 ntTSL 4 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HIF3AQ9Y2N7 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms