Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL20A1Q9P218 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
COL20A1Q9P218 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC16.42■□□□□ 0.22
COL20A1Q9P218 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL20A1Q9P218 BRD7P5-201ENST00000299197 1822 ntBASIC16.42■□□□□ 0.22
COL20A1Q9P218 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL20A1Q9P218 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL20A1Q9P218 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
COL20A1Q9P218 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC16.42■□□□□ 0.22
COL20A1Q9P218 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC16.42■□□□□ 0.22
COL20A1Q9P218 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.42■□□□□ 0.22
COL20A1Q9P218 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
COL20A1Q9P218 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC16.42■□□□□ 0.22
COL20A1Q9P218 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 KRT17P5-201ENST00000332088 839 ntBASIC16.41■□□□□ 0.22
COL20A1Q9P218 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 FOS-204ENST00000554617 796 ntTSL 2 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 MIR5572-201ENST00000583188 137 ntBASIC16.41■□□□□ 0.22
COL20A1Q9P218 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 AC021016.3-201ENST00000608367 477 ntBASIC16.41■□□□□ 0.22
COL20A1Q9P218 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 KRT18P9-201ENST00000604826 1300 ntBASIC16.41■□□□□ 0.22
COL20A1Q9P218 AC064801.2-201ENST00000625052 1303 ntBASIC16.41■□□□□ 0.22
COL20A1Q9P218 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL20A1Q9P218 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
COL20A1Q9P218 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL20A1Q9P218 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL20A1Q9P218 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL20A1Q9P218 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.4■□□□□ 0.22
COL20A1Q9P218 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
COL20A1Q9P218 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
COL20A1Q9P218 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC16.4■□□□□ 0.22
COL20A1Q9P218 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.4■□□□□ 0.22
COL20A1Q9P218 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL20A1Q9P218 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.4■□□□□ 0.22
COL20A1Q9P218 AC140479.7-201ENST00000636301 2332 ntBASIC16.4■□□□□ 0.22
COL20A1Q9P218 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC16.4■□□□□ 0.22
COL20A1Q9P218 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL20A1Q9P218 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL20A1Q9P218 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL20A1Q9P218 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL20A1Q9P218 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC16.4■□□□□ 0.22
COL20A1Q9P218 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
COL20A1Q9P218 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL20A1Q9P218 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
COL20A1Q9P218 DUTP3-201ENST00000450025 415 ntBASIC16.4■□□□□ 0.22
COL20A1Q9P218 TPT1P11-201ENST00000458482 498 ntBASIC16.4■□□□□ 0.22
COL20A1Q9P218 PARP8-218ENST00000513738 596 ntTSL 4 BASIC16.4■□□□□ 0.22
COL20A1Q9P218 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL20A1Q9P218 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC16.4■□□□□ 0.22
COL20A1Q9P218 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC16.4■□□□□ 0.22
COL20A1Q9P218 MIR4522-201ENST00000584932 87 ntBASIC16.4■□□□□ 0.22
COL20A1Q9P218 AL805961.1-201ENST00000642026 753 ntBASIC16.4■□□□□ 0.22
COL20A1Q9P218 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC16.4■□□□□ 0.22
COL20A1Q9P218 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
COL20A1Q9P218 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL20A1Q9P218 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.4■□□□□ 0.22
COL20A1Q9P218 AC106881.1-201ENST00000605849 3329 ntBASIC16.4■□□□□ 0.22
COL20A1Q9P218 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
COL20A1Q9P218 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL20A1Q9P218 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL20A1Q9P218 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL20A1Q9P218 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.22
COL20A1Q9P218 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC16.39■□□□□ 0.21
COL20A1Q9P218 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms