Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 AC011239.1-201ENST00000430988 584 ntTSL 4 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 RNF181-203ENST00000441634 844 ntAPPRIS ALT1 TSL 2 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 AC106782.5-201ENST00000616011 337 ntBASIC14.07□□□□□ -0.16
VPS13AQ96RL7 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 PCP2-201ENST00000311069 776 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 AL954722.1-201ENST00000431238 259 ntBASIC14.06□□□□□ -0.16
VPS13AQ96RL7 ZNF877P-201ENST00000437614 612 ntBASIC14.06□□□□□ -0.16
VPS13AQ96RL7 KRT18P62-201ENST00000446618 1287 ntBASIC14.06□□□□□ -0.16
VPS13AQ96RL7 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 NRADDP-201ENST00000437305 691 ntBASIC14.06□□□□□ -0.16
VPS13AQ96RL7 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 AC106789.1-201ENST00000512927 570 ntTSL 4 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 RN7SL556P-201ENST00000582856 298 ntBASIC14.06□□□□□ -0.16
VPS13AQ96RL7 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 RPL18AP16-201ENST00000424057 531 ntBASIC14.06□□□□□ -0.16
VPS13AQ96RL7 HMGA1P2-201ENST00000430198 324 ntBASIC14.06□□□□□ -0.16
VPS13AQ96RL7 AP000920.1-201ENST00000531824 344 ntBASIC14.06□□□□□ -0.16
VPS13AQ96RL7 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 ACTBP9-201ENST00000587663 1099 ntBASIC14.06□□□□□ -0.16
VPS13AQ96RL7 AC022098.2-201ENST00000590528 518 ntTSL 4 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC14.06□□□□□ -0.16
VPS13AQ96RL7 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 SHMT1P1-201ENST00000419974 1312 ntBASIC14.05□□□□□ -0.16
VPS13AQ96RL7 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 KRT18P44-201ENST00000416086 1285 ntBASIC14.05□□□□□ -0.16
VPS13AQ96RL7 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 MBP-230ENST00000528160 584 ntTSL 5 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 AC024405.2-201ENST00000528459 810 ntTSL 5 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 ACY3-202ENST00000529256 933 ntTSL 3 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms