Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 AC091046.1-201ENST00000331871 207 ntBASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 TSPY25P-201ENST00000429463 745 ntBASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 RTN3P1-201ENST00000536295 711 ntBASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 MIR3188-201ENST00000583494 85 ntBASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 CENPX-208ENST00000584347 799 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 IRF3-215ENST00000596822 823 ntTSL 3 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 AC113367.3-201ENST00000508316 1912 ntBASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 AC015909.3-201ENST00000572855 1794 ntBASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 HLA-DQB2-229ENST00000411527 1059 ntBASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 PARVG-202ENST00000415224 999 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 AL353637.1-201ENST00000451571 732 ntBASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 MIR3907-201ENST00000579424 151 ntBASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC60Q8IWA6 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
CCDC60Q8IWA6 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CCDC60Q8IWA6 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
CCDC60Q8IWA6 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
CCDC60Q8IWA6 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 FRMPD2B-201ENST00000431305 1347 ntBASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 AP001267.2-201ENST00000532619 2086 ntBASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms