Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC18.81■□□□□ 0.6
USP54Q70EL1 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
USP54Q70EL1 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC18.81■□□□□ 0.6
USP54Q70EL1 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC18.81■□□□□ 0.6
USP54Q70EL1 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP54Q70EL1 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC18.81■□□□□ 0.6
USP54Q70EL1 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
USP54Q70EL1 USP39-207ENST00000450066 2086 ntTSL 2 BASIC18.81■□□□□ 0.6
USP54Q70EL1 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP54Q70EL1 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC18.81■□□□□ 0.6
USP54Q70EL1 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
USP54Q70EL1 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
USP54Q70EL1 RCC2P1-201ENST00000452257 1476 ntBASIC18.81■□□□□ 0.6
USP54Q70EL1 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USP54Q70EL1 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USP54Q70EL1 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP54Q70EL1 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP54Q70EL1 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP54Q70EL1 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP54Q70EL1 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP54Q70EL1 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC18.8■□□□□ 0.6
USP54Q70EL1 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USP54Q70EL1 RNA5SP491-201ENST00000362936 118 ntBASIC18.8■□□□□ 0.6
USP54Q70EL1 DDX39AP1-201ENST00000445147 1181 ntBASIC18.8■□□□□ 0.6
USP54Q70EL1 GULOP-201ENST00000454030 748 ntBASIC18.8■□□□□ 0.6
USP54Q70EL1 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC18.8■□□□□ 0.6
USP54Q70EL1 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC18.8■□□□□ 0.6
USP54Q70EL1 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC18.8■□□□□ 0.6
USP54Q70EL1 AL160191.2-201ENST00000603975 601 ntBASIC18.8■□□□□ 0.6
USP54Q70EL1 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
USP54Q70EL1 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP54Q70EL1 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP54Q70EL1 PHB-210ENST00000511832 1509 ntTSL 2 BASIC18.8■□□□□ 0.6
USP54Q70EL1 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP54Q70EL1 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP54Q70EL1 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP54Q70EL1 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC18.8■□□□□ 0.6
USP54Q70EL1 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP54Q70EL1 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP54Q70EL1 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC18.8■□□□□ 0.6
USP54Q70EL1 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP54Q70EL1 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP54Q70EL1 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC18.8■□□□□ 0.6
USP54Q70EL1 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
USP54Q70EL1 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP54Q70EL1 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP54Q70EL1 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC18.79■□□□□ 0.6
USP54Q70EL1 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC18.79■□□□□ 0.6
USP54Q70EL1 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC18.79■□□□□ 0.6
USP54Q70EL1 AC090136.2-201ENST00000517809 420 ntBASIC18.79■□□□□ 0.6
USP54Q70EL1 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC18.79■□□□□ 0.6
USP54Q70EL1 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC18.79■□□□□ 0.6
USP54Q70EL1 FAM187B2P-201ENST00000577135 713 ntBASIC18.79■□□□□ 0.6
USP54Q70EL1 MIR4326-201ENST00000582203 59 ntBASIC18.79■□□□□ 0.6
USP54Q70EL1 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC18.79■□□□□ 0.6
USP54Q70EL1 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC18.79■□□□□ 0.6
USP54Q70EL1 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC18.79■□□□□ 0.6
USP54Q70EL1 USP44-202ENST00000393091 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP54Q70EL1 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
USP54Q70EL1 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP54Q70EL1 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP54Q70EL1 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP54Q70EL1 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP54Q70EL1 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP54Q70EL1 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP54Q70EL1 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP54Q70EL1 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP54Q70EL1 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
USP54Q70EL1 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
USP54Q70EL1 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP54Q70EL1 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP54Q70EL1 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP54Q70EL1 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
USP54Q70EL1 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP54Q70EL1 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC18.79■□□□□ 0.6
USP54Q70EL1 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC18.79■□□□□ 0.6
USP54Q70EL1 NALT1-202ENST00000450304 437 ntTSL 3 BASIC18.79■□□□□ 0.6
USP54Q70EL1 AC068831.5-201ENST00000557387 328 ntBASIC18.79■□□□□ 0.6
USP54Q70EL1 AC132812.1-201ENST00000583145 892 ntBASIC18.79■□□□□ 0.6
USP54Q70EL1 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC18.79■□□□□ 0.6
USP54Q70EL1 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
USP54Q70EL1 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC18.78■□□□□ 0.6
USP54Q70EL1 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC18.78■□□□□ 0.6
USP54Q70EL1 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP54Q70EL1 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.78■□□□□ 0.6
USP54Q70EL1 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC18.78■□□□□ 0.6
USP54Q70EL1 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC18.78■□□□□ 0.6
USP54Q70EL1 GOLGA8VP-201ENST00000559009 1798 ntBASIC18.78■□□□□ 0.6
USP54Q70EL1 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP54Q70EL1 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
USP54Q70EL1 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC18.78■□□□□ 0.6
USP54Q70EL1 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP54Q70EL1 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP54Q70EL1 AC024075.2-201ENST00000598112 1473 ntBASIC18.78■□□□□ 0.6
USP54Q70EL1 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP54Q70EL1 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP54Q70EL1 SERF2-206ENST00000409291 807 ntTSL 3 BASIC18.78■□□□□ 0.6
USP54Q70EL1 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC18.78■□□□□ 0.6
USP54Q70EL1 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC18.78■□□□□ 0.6
USP54Q70EL1 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms