Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL18A1P39060 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC18.66■□□□□ 0.58
COL18A1P39060 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC18.66■□□□□ 0.58
COL18A1P39060 AL022313.4-201ENST00000562756 2046 ntBASIC18.66■□□□□ 0.58
COL18A1P39060 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL18A1P39060 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
COL18A1P39060 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL18A1P39060 RPL10L-201ENST00000298283 812 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
COL18A1P39060 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC18.65■□□□□ 0.58
COL18A1P39060 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL18A1P39060 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC18.65■□□□□ 0.58
COL18A1P39060 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC18.65■□□□□ 0.58
COL18A1P39060 CDCA4P4-201ENST00000435216 680 ntBASIC18.65■□□□□ 0.58
COL18A1P39060 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL18A1P39060 VDAC1P11-201ENST00000458323 852 ntBASIC18.65■□□□□ 0.58
COL18A1P39060 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC18.65■□□□□ 0.58
COL18A1P39060 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC18.65■□□□□ 0.58
COL18A1P39060 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL18A1P39060 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC18.65■□□□□ 0.58
COL18A1P39060 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL18A1P39060 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC18.65■□□□□ 0.58
COL18A1P39060 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL18A1P39060 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
COL18A1P39060 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL18A1P39060 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC18.65■□□□□ 0.58
COL18A1P39060 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL18A1P39060 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC18.65■□□□□ 0.58
COL18A1P39060 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL18A1P39060 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL18A1P39060 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
COL18A1P39060 MTHFR-210ENST00000641407 2387 ntBASIC18.65■□□□□ 0.58
COL18A1P39060 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
COL18A1P39060 AC103563.1-201ENST00000429316 123 ntBASIC18.65■□□□□ 0.58
COL18A1P39060 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL18A1P39060 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC18.65■□□□□ 0.58
COL18A1P39060 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL18A1P39060 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC18.65■□□□□ 0.58
COL18A1P39060 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC18.65■□□□□ 0.58
COL18A1P39060 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC18.65■□□□□ 0.58
COL18A1P39060 AC026120.2-201ENST00000617239 309 ntBASIC18.65■□□□□ 0.58
COL18A1P39060 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL18A1P39060 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
COL18A1P39060 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL18A1P39060 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL18A1P39060 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL18A1P39060 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL18A1P39060 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC18.64■□□□□ 0.58
COL18A1P39060 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
COL18A1P39060 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL18A1P39060 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL18A1P39060 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC18.64■□□□□ 0.57
COL18A1P39060 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC18.64■□□□□ 0.57
COL18A1P39060 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL18A1P39060 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
COL18A1P39060 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL18A1P39060 SIRPB3P-201ENST00000340424 1216 ntBASIC18.64■□□□□ 0.57
COL18A1P39060 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL18A1P39060 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL18A1P39060 USP17L6P-201ENST00000382470 1197 ntBASIC18.64■□□□□ 0.57
COL18A1P39060 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC18.64■□□□□ 0.57
COL18A1P39060 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
COL18A1P39060 BRI3P1-201ENST00000440440 378 ntBASIC18.64■□□□□ 0.57
COL18A1P39060 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
COL18A1P39060 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC18.64■□□□□ 0.57
COL18A1P39060 AC011462.4-201ENST00000616866 449 ntBASIC18.64■□□□□ 0.57
COL18A1P39060 MIR6816-201ENST00000620368 66 ntBASIC18.64■□□□□ 0.57
COL18A1P39060 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC18.64■□□□□ 0.57
COL18A1P39060 AC139713.2-207ENST00000641556 1292 ntBASIC18.64■□□□□ 0.57
COL18A1P39060 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL18A1P39060 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL18A1P39060 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL18A1P39060 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL18A1P39060 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC18.64■□□□□ 0.57
COL18A1P39060 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL18A1P39060 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL18A1P39060 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC18.64■□□□□ 0.57
COL18A1P39060 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
COL18A1P39060 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC18.64■□□□□ 0.57
COL18A1P39060 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.64■□□□□ 0.57
COL18A1P39060 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL18A1P39060 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
COL18A1P39060 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL18A1P39060 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
COL18A1P39060 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL18A1P39060 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL18A1P39060 RNA5SP491-201ENST00000362936 118 ntBASIC18.63■□□□□ 0.57
COL18A1P39060 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC18.63■□□□□ 0.57
COL18A1P39060 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC18.63■□□□□ 0.57
COL18A1P39060 GULOP-201ENST00000454030 748 ntBASIC18.63■□□□□ 0.57
COL18A1P39060 AC025594.1-201ENST00000469533 543 ntBASIC18.63■□□□□ 0.57
COL18A1P39060 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL18A1P39060 COQ10BP2-201ENST00000513804 724 ntBASIC18.63■□□□□ 0.57
COL18A1P39060 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC18.63■□□□□ 0.57
COL18A1P39060 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC18.63■□□□□ 0.57
COL18A1P39060 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC18.63■□□□□ 0.57
COL18A1P39060 AC005777.1-201ENST00000588332 187 ntBASIC18.63■□□□□ 0.57
COL18A1P39060 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL18A1P39060 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL18A1P39060 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.63■□□□□ 0.57
COL18A1P39060 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms