Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.23□□□□□ -0.13
CLDN9O95484 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.23□□□□□ -0.13
CLDN9O95484 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.23□□□□□ -0.13
CLDN9O95484 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.23□□□□□ -0.13
CLDN9O95484 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC14.23□□□□□ -0.13
CLDN9O95484 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 MPV17-205ENST00000402310 906 ntTSL 5 BASIC14.23□□□□□ -0.13
CLDN9O95484 AC004945.1-201ENST00000416738 983 ntBASIC14.23□□□□□ -0.13
CLDN9O95484 CD8B2-202ENST00000417670 633 ntBASIC14.23□□□□□ -0.13
CLDN9O95484 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.23□□□□□ -0.13
CLDN9O95484 AC016694.1-201ENST00000434179 700 ntBASIC14.23□□□□□ -0.13
CLDN9O95484 TTTY23B-201ENST00000442790 549 ntBASIC14.23□□□□□ -0.13
CLDN9O95484 INE1-201ENST00000456273 945 ntBASIC14.23□□□□□ -0.13
CLDN9O95484 AL590640.2-201ENST00000457038 527 ntBASIC14.23□□□□□ -0.13
CLDN9O95484 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.23□□□□□ -0.13
CLDN9O95484 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.23□□□□□ -0.13
CLDN9O95484 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.23□□□□□ -0.13
CLDN9O95484 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.23□□□□□ -0.13
CLDN9O95484 AC008735.3-201ENST00000596646 500 ntBASIC14.23□□□□□ -0.13
CLDN9O95484 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.23□□□□□ -0.13
CLDN9O95484 AL358472.5-202ENST00000641448 1267 ntBASIC14.23□□□□□ -0.13
CLDN9O95484 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC14.23□□□□□ -0.13
CLDN9O95484 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.23□□□□□ -0.13
CLDN9O95484 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CLDN9O95484 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.23□□□□□ -0.13
CLDN9O95484 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.23□□□□□ -0.13
CLDN9O95484 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.23□□□□□ -0.13
CLDN9O95484 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC14.23□□□□□ -0.13
CLDN9O95484 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLDN9O95484 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
CLDN9O95484 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC14.22□□□□□ -0.13
CLDN9O95484 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.22□□□□□ -0.13
CLDN9O95484 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.22□□□□□ -0.13
CLDN9O95484 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CLDN9O95484 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.22□□□□□ -0.13
CLDN9O95484 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.22□□□□□ -0.13
CLDN9O95484 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.22□□□□□ -0.13
CLDN9O95484 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CLDN9O95484 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.22□□□□□ -0.13
CLDN9O95484 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 AL512384.1-201ENST00000406683 331 ntBASIC14.22□□□□□ -0.13
CLDN9O95484 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.22□□□□□ -0.13
CLDN9O95484 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CLDN9O95484 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14.22□□□□□ -0.13
CLDN9O95484 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
CLDN9O95484 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CLDN9O95484 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 BTNL10-201ENST00000595971 695 ntBASIC14.22□□□□□ -0.13
CLDN9O95484 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
CLDN9O95484 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.22□□□□□ -0.13
CLDN9O95484 AC002472.3-201ENST00000640124 621 ntBASIC14.22□□□□□ -0.13
CLDN9O95484 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLDN9O95484 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms