Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MGST3-203ENST00000367885 680 ntTSL 2 BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 AP006294.1-201ENST00000415407 339 ntBASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 POLD4-211ENST00000539074 714 ntTSL 3 BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 COQ6-210ENST00000554920 649 ntTSL 3 BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 Z99916.3-201ENST00000623422 1080 ntBASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 AL731571.1-201ENST00000617058 5428 ntBASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HIF3AQ9Y2N7 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 GUK1-206ENST00000366723 845 ntTSL 5 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 RN7SKP175-201ENST00000408472 289 ntBASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 AL391280.1-201ENST00000506969 1062 ntBASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 AC132938.4-201ENST00000623835 848 ntBASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HIF3AQ9Y2N7 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 F10-203ENST00000409306 1450 ntTSL 3 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 MST1P2-201ENST00000457982 2291 ntBASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC13.29□□□□□ -0.28
HIF3AQ9Y2N7 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms