Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
USB1Q9BQ65 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
USB1Q9BQ65 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
USB1Q9BQ65 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
USB1Q9BQ65 APP-205ENST00000358918 2366 ntTSL 5 BASIC13.38□□□□□ -0.27
USB1Q9BQ65 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
USB1Q9BQ65 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
USB1Q9BQ65 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
USB1Q9BQ65 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
USB1Q9BQ65 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
USB1Q9BQ65 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
USB1Q9BQ65 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC13.38□□□□□ -0.27
USB1Q9BQ65 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC13.38□□□□□ -0.27
USB1Q9BQ65 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
USB1Q9BQ65 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 TPM3P8-201ENST00000330554 643 ntBASIC13.37□□□□□ -0.27
USB1Q9BQ65 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 TRMT13-201ENST00000370139 711 ntTSL 3 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 CSF2RBP1-201ENST00000447905 391 ntBASIC13.37□□□□□ -0.27
USB1Q9BQ65 EAF2-202ENST00000451944 960 ntTSL 2 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 CAB39P1-201ENST00000502277 460 ntBASIC13.37□□□□□ -0.27
USB1Q9BQ65 CSNK1A1P3-201ENST00000504105 330 ntBASIC13.37□□□□□ -0.27
USB1Q9BQ65 AC106760.1-201ENST00000508690 800 ntBASIC13.37□□□□□ -0.27
USB1Q9BQ65 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 DUX4L45-201ENST00000566406 1057 ntBASIC13.37□□□□□ -0.27
USB1Q9BQ65 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 AC020763.2-201ENST00000623155 1255 ntBASIC13.37□□□□□ -0.27
USB1Q9BQ65 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 FOS-202ENST00000535987 1402 ntTSL 2 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
USB1Q9BQ65 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
USB1Q9BQ65 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USB1Q9BQ65 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USB1Q9BQ65 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USB1Q9BQ65 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC13.36□□□□□ -0.27
USB1Q9BQ65 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC13.36□□□□□ -0.27
USB1Q9BQ65 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USB1Q9BQ65 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
USB1Q9BQ65 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
USB1Q9BQ65 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
USB1Q9BQ65 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC13.36□□□□□ -0.27
USB1Q9BQ65 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USB1Q9BQ65 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
USB1Q9BQ65 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC13.36□□□□□ -0.27
USB1Q9BQ65 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USB1Q9BQ65 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.36□□□□□ -0.27
USB1Q9BQ65 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USB1Q9BQ65 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USB1Q9BQ65 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USB1Q9BQ65 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USB1Q9BQ65 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC13.36□□□□□ -0.27
USB1Q9BQ65 BX005214.2-201ENST00000423499 1077 ntTSL 5 BASIC13.36□□□□□ -0.27
USB1Q9BQ65 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC13.36□□□□□ -0.27
USB1Q9BQ65 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
USB1Q9BQ65 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms