Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC14.33□□□□□ -0.12
PKP4Q99569 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC14.33□□□□□ -0.12
PKP4Q99569 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
PKP4Q99569 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 AC010141.1-201ENST00000411585 623 ntBASIC14.33□□□□□ -0.12
PKP4Q99569 OLR1-203ENST00000432556 950 ntTSL 2 BASIC14.33□□□□□ -0.12
PKP4Q99569 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC14.33□□□□□ -0.12
PKP4Q99569 BNIP3P42-201ENST00000454982 569 ntBASIC14.33□□□□□ -0.12
PKP4Q99569 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC14.33□□□□□ -0.12
PKP4Q99569 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 AC100850.1-201ENST00000506768 649 ntBASIC14.33□□□□□ -0.12
PKP4Q99569 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC14.33□□□□□ -0.12
PKP4Q99569 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
PKP4Q99569 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC14.33□□□□□ -0.12
PKP4Q99569 DUX4L45-201ENST00000566406 1057 ntBASIC14.33□□□□□ -0.12
PKP4Q99569 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.33□□□□□ -0.12
PKP4Q99569 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC14.33□□□□□ -0.12
PKP4Q99569 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.33□□□□□ -0.12
PKP4Q99569 BNIP3P29-201ENST00000598302 571 ntBASIC14.33□□□□□ -0.12
PKP4Q99569 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 AC011447.5-201ENST00000616168 564 ntBASIC14.33□□□□□ -0.12
PKP4Q99569 AC027601.3-201ENST00000622907 509 ntBASIC14.33□□□□□ -0.12
PKP4Q99569 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
PKP4Q99569 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.33□□□□□ -0.12
PKP4Q99569 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.33□□□□□ -0.12
PKP4Q99569 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.33□□□□□ -0.12
PKP4Q99569 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.33□□□□□ -0.12
PKP4Q99569 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC14.32□□□□□ -0.12
PKP4Q99569 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.32□□□□□ -0.12
PKP4Q99569 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
PKP4Q99569 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.32□□□□□ -0.12
PKP4Q99569 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.32□□□□□ -0.12
PKP4Q99569 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
PKP4Q99569 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
PKP4Q99569 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.32□□□□□ -0.12
PKP4Q99569 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 MIR326-201ENST00000362220 95 ntBASIC14.32□□□□□ -0.12
PKP4Q99569 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
PKP4Q99569 TISP43-201ENST00000409793 538 ntTSL 4 BASIC14.32□□□□□ -0.12
PKP4Q99569 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14.32□□□□□ -0.12
PKP4Q99569 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC14.32□□□□□ -0.12
PKP4Q99569 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC14.32□□□□□ -0.12
PKP4Q99569 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC14.32□□□□□ -0.12
PKP4Q99569 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC14.32□□□□□ -0.12
PKP4Q99569 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.32□□□□□ -0.12
PKP4Q99569 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.32□□□□□ -0.12
PKP4Q99569 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC14.32□□□□□ -0.12
PKP4Q99569 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 KRT8P28-201ENST00000433288 1390 ntBASIC14.32□□□□□ -0.12
PKP4Q99569 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.32□□□□□ -0.12
PKP4Q99569 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.32□□□□□ -0.12
PKP4Q99569 E2F3P2-201ENST00000447755 1422 ntBASIC14.32□□□□□ -0.12
PKP4Q99569 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
PKP4Q99569 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.32□□□□□ -0.12
PKP4Q99569 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
PKP4Q99569 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PKP4Q99569 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PKP4Q99569 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
PKP4Q99569 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PKP4Q99569 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
PKP4Q99569 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms