Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 POM121L9P-203ENST00000441984 1285 ntBASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 AL391280.1-201ENST00000506969 1062 ntBASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 CDK4-206ENST00000549606 558 ntTSL 2 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 AC103988.2-201ENST00000561804 725 ntBASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 HPD-204ENST00000543163 1709 ntTSL 5 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 AC023794.5-201ENST00000564380 2157 ntBASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 DDC-213ENST00000617822 1809 ntTSL 3 BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 KHSRPP1-201ENST00000427983 1768 ntBASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 MIR770-201ENST00000390219 98 ntBASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 AC245100.3-201ENST00000441281 285 ntBASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 VPS18-202ENST00000558474 873 ntTSL 3 BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 LINC02560-201ENST00000596379 459 ntBASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 GPALPP1-207ENST00000611650 899 ntBASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 MIR6074-201ENST00000612054 107 ntBASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 AC145423.3-201ENST00000615987 467 ntBASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 AJ011932.1-201ENST00000621707 465 ntBASIC15.27■□□□□ 0.04
ATG4AQ8WYN0 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.03
ATG4AQ8WYN0 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ATG4AQ8WYN0 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC15.27■□□□□ 0.03
ATG4AQ8WYN0 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
ATG4AQ8WYN0 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ATG4AQ8WYN0 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.03
ATG4AQ8WYN0 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC15.27■□□□□ 0.03
ATG4AQ8WYN0 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ATG4AQ8WYN0 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
ATG4AQ8WYN0 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ATG4AQ8WYN0 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 APP-205ENST00000358918 2366 ntTSL 5 BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 AL157996.1-201ENST00000624684 2299 ntBASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 NSL1-201ENST00000366976 722 ntTSL 2 BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.26■□□□□ 0.03
ATG4AQ8WYN0 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms