Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AP002754.1-201ENST00000506329 2349 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 POLE-201ENST00000320574 7840 ntAPPRIS P2 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 IVD-203ENST00000479013 4251 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 AC000068.1-201ENST00000431090 2097 ntTSL 2 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 AC007666.1-201ENST00000443935 1838 ntTSL 5 BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 NDST1-201ENST00000261797 8030 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
LINC00643Q86TS7 MCM3AP-201ENST00000291688 6193 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 KLC4-203ENST00000394056 2770 ntAPPRIS ALT2 TSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 CDCA3-202ENST00000422785 2760 ntTSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 CHST15-202ENST00000435907 4820 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 AC245100.6-201ENST00000427169 1918 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 UGT3A1-203ENST00000503189 1902 ntTSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 LAS1L-201ENST00000374804 2261 ntTSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 MCPH1-207ENST00000522905 2049 ntTSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 PTCD2-212ENST00000543322 2029 ntTSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 FAN1-201ENST00000362065 4891 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 MMD2-203ENST00000406755 2372 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 SLC6A6-210ENST00000622186 6528 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 DIDO1-202ENST00000354665 2707 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 FN1-206ENST00000359671 8524 ntTSL 5 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 KCNH1-202ENST00000367007 3445 ntTSL 5 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 ZYX-203ENST00000392910 2123 ntAPPRIS ALT2 TSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 SMARCA2-254ENST00000636903 2471 ntTSL 5 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 GLIPR2-202ENST00000377960 1890 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 GRID1-201ENST00000327946 5834 ntAPPRIS P1 TSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 ZNF287-201ENST00000395824 3373 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 PRPF6-201ENST00000266079 3044 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 AC087163.2-201ENST00000457299 853 ntBASIC9.07□□□□□ -0.96
LINC00643Q86TS7 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 AC116562.2-201ENST00000507042 360 ntBASIC9.07□□□□□ -0.96
LINC00643Q86TS7 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 CD320-202ENST00000537716 1119 ntTSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 NT5C-210ENST00000582160 860 ntTSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 TRIR-205ENST00000592273 783 ntTSL 3 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 AC011495.2-201ENST00000600665 360 ntTSL 5 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 CC2D1A-208ENST00000589606 3117 ntAPPRIS ALT1 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 PCDHA9-201ENST00000378122 6900 ntBASIC9.07□□□□□ -0.96
LINC00643Q86TS7 AC020741.1-201ENST00000381217 2079 ntTSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 CLU-202ENST00000405140 2098 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 ZNF701-204ENST00000540331 5538 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 GID4-202ENST00000376345 1391 ntTSL 3 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 PLEKHA6-205ENST00000637508 5704 ntTSL 5 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 PRPF40B-202ENST00000380281 3154 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 RHBDD1-201ENST00000341329 4883 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 RPS6KA1-220ENST00000531382 2359 ntTSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 ZNF318-201ENST00000361428 8006 ntAPPRIS P2 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 POLA2-201ENST00000265465 3744 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 ZBTB26-201ENST00000373654 2047 ntAPPRIS P1 TSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 ABLIM2-206ENST00000447017 2902 ntAPPRIS P4 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 AC135050.1-201ENST00000622229 3380 ntTSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 PNPO-217ENST00000642017 3465 ntAPPRIS P1 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 SGK1-220ENST00000524929 2594 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 UBA3-201ENST00000349511 2112 ntAPPRIS ALT1 TSL 2 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 BARD1-201ENST00000260947 5499 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 SPTBN1-202ENST00000356805 8482 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 ARHGEF10L-203ENST00000375408 3685 ntTSL 5 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 CYTH1-210ENST00000589297 3756 ntTSL 5 BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 CEACAM20-201ENST00000611497 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
LINC00643Q86TS7 AC073439.1-201ENST00000624121 1774 ntBASIC9.07□□□□□ -0.96
LINC00643Q86TS7 NLRP1-208ENST00000571451 5444 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 SIGLEC1-201ENST00000344754 6720 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 RAB10-201ENST00000264710 3535 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 MYO10-210ENST00000513610 8038 ntAPPRIS P2 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 DIAPH2-203ENST00000373049 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 ABI1-212ENST00000490841 3188 ntTSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 COL22A1-203ENST00000435777 4355 ntAPPRIS ALT2 TSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 SLC44A4-210ENST00000544672 2634 ntTSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC9.06□□□□□ -0.96
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms