RNA–Protein interactions for RNA: ENST00000378122.4

PCDHA9-201, Transcript of protocadherin alpha 9, humanhuman

BASIC

Gene PCDHA9, Length 6,900 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-201ENST00000378122 DCAF8L2P0C7V8 631 aa21.48■■□□□ 1.03
PCDHA9-201ENST00000378122 EHMT2Q96KQ7 1210 aa19.88■□□□□ 0.77
PCDHA9-201ENST00000378122 SUPT5HO00267 1087 aaKnown RBP19.6■□□□□ 0.73
PCDHA9-201ENST00000378122 SHROOM4Q9ULL8 1493 aa19.27■□□□□ 0.68
PCDHA9-201ENST00000378122 NISCHQ9Y2I1 1504 aa19.25■□□□□ 0.67
PCDHA9-201ENST00000378122 TTBK1Q5TCY1 1321 aaPredicted RBP19.01■□□□□ 0.63
PCDHA9-201ENST00000378122 PELP1Q8IZL8 1130 aaKnown RBP18.99■□□□□ 0.63
PCDHA9-201ENST00000378122 FAM9AQ8IZU1 332 aaPredicted RBP18.9■□□□□ 0.62
PCDHA9-201ENST00000378122 RANGAP1P46060 587 aaPredicted RBP18.87■□□□□ 0.61
PCDHA9-201ENST00000378122 ATP1B4Q9UN42 357 aaPredicted RBP18.67■□□□□ 0.58
PCDHA9-201ENST00000378122 PCGF6Q9BYE7 350 aa18.65■□□□□ 0.58
PCDHA9-201ENST00000378122 APLP2Q06481 763 aa18.54■□□□□ 0.56
PCDHA9-201ENST00000378122 MYT1LQ9UL68 1186 aa18.47■□□□□ 0.55
PCDHA9-201ENST00000378122 CHIC1Q5VXU3 224 aa18.42■□□□□ 0.54
PCDHA9-201ENST00000378122 CENPBP07199 599 aaPredicted RBP18.37■□□□□ 0.53
PCDHA9-201ENST00000378122 ERICH6Q7L0X2 663 aa18.37■□□□□ 0.53
PCDHA9-201ENST00000378122 ZEB1P37275 1124 aaPredicted RBP18.25■□□□□ 0.51
PCDHA9-201ENST00000378122 CCER1Q8TC90 406 aaPredicted RBP18.22■□□□□ 0.51
PCDHA9-201ENST00000378122 MYT1Q01538 1121 aa18.15■□□□□ 0.5
PCDHA9-201ENST00000378122 YTHDC1Q96MU7 727 aaKnown RBP18.1■□□□□ 0.49
PCDHA9-201ENST00000378122 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.06■□□□□ 0.48
PCDHA9-201ENST00000378122 HNRNPUL2Q1KMD3 747 aaKnown RBP18.06■□□□□ 0.48
PCDHA9-201ENST00000378122 TRIM41Q8WV44 630 aa18.06■□□□□ 0.48
PCDHA9-201ENST00000378122 CNGB1Q14028 1251 aaPredicted RBP18.01■□□□□ 0.47
PCDHA9-201ENST00000378122 PPARGC1BQ86YN6 1023 aaKnown RBP17.9■□□□□ 0.46
PCDHA9-201ENST00000378122 NEFLP07196 543 aa17.87■□□□□ 0.45
PCDHA9-201ENST00000378122 POLR3GLQ9BT43 218 aa17.87■□□□□ 0.45
PCDHA9-201ENST00000378122 UBTFP17480 764 aaKnown RBP17.85■□□□□ 0.45
PCDHA9-201ENST00000378122 SLC4A1APQ9BWU0 796 aaKnown RBP17.78■□□□□ 0.44
PCDHA9-201ENST00000378122 HRCP23327 699 aa17.77■□□□□ 0.44
PCDHA9-201ENST00000378122 TRIM26Q12899 539 aaPredicted RBP17.73■□□□□ 0.43
PCDHA9-201ENST00000378122 PLPPR3Q6T4P5 718 aa17.71■□□□□ 0.43
PCDHA9-201ENST00000378122 ITGAEP38570 1179 aa17.6■□□□□ 0.41
PCDHA9-201ENST00000378122 FBLN2P98095 1184 aa17.56■□□□□ 0.4
PCDHA9-201ENST00000378122 LOC105371045A0A1W2PR82 267 aa17.51■□□□□ 0.39
PCDHA9-201ENST00000378122 BCL11AQ9H165 835 aa17.47■□□□□ 0.39
PCDHA9-201ENST00000378122 PABPN1Q86U42 306 aaKnown RBP eCLIP17.45■□□□□ 0.38
PCDHA9-201ENST00000378122 BCANQ96GW7 911 aa17.44■□□□□ 0.38
PCDHA9-201ENST00000378122 SLC24A1O60721 1099 aa17.42■□□□□ 0.38
PCDHA9-201ENST00000378122 DAXXQ9UER7 740 aaPredicted RBP17.38■□□□□ 0.37
PCDHA9-201ENST00000378122 DIEXFQ68CQ4 756 aaKnown RBP17.25■□□□□ 0.35
PCDHA9-201ENST00000378122 ABCC9O60706 1549 aa17.2■□□□□ 0.34
PCDHA9-201ENST00000378122 RTL5Q5HYW3 569 aaPredicted RBP17.13■□□□□ 0.33
PCDHA9-201ENST00000378122 GTF3C3Q9Y5Q9 886 aa17.12■□□□□ 0.33
PCDHA9-201ENST00000378122 ARID3CA6NKF2 412 aa17.09■□□□□ 0.33
PCDHA9-201ENST00000378122 ESF1Q9H501 851 aaKnown RBP17.07■□□□□ 0.32
PCDHA9-201ENST00000378122 ZNF316A6NFI3 1004 aaPredicted RBP17.05■□□□□ 0.32
PCDHA9-201ENST00000378122 PLEKHG5O94827 1062 aa17■□□□□ 0.31
PCDHA9-201ENST00000378122 A0A0G2JS52 829 aa16.99■□□□□ 0.31
PCDHA9-201ENST00000378122 SCAF1Q9H7N4 1312 aaKnown RBP16.97■□□□□ 0.31
PCDHA9-201ENST00000378122 CLSPNQ9HAW4 1339 aa16.96■□□□□ 0.31
PCDHA9-201ENST00000378122 FAM50AQ14320 339 aaKnown RBP16.94■□□□□ 0.3
PCDHA9-201ENST00000378122 NEUROD1Q13562 356 aa16.93■□□□□ 0.3
PCDHA9-201ENST00000378122 SENP3Q9H4L4 574 aaPredicted RBP16.92■□□□□ 0.3
PCDHA9-201ENST00000378122 ZNF326Q5BKZ1 582 aaKnown RBP16.88■□□□□ 0.29
PCDHA9-201ENST00000378122 TRIM52Q96A61 297 aa16.87■□□□□ 0.29
PCDHA9-201ENST00000378122 STAG3Q9UJ98 1225 aa16.84■□□□□ 0.29
PCDHA9-201ENST00000378122 CDK11AQ9UQ88 783 aaPredicted RBP16.83■□□□□ 0.28
PCDHA9-201ENST00000378122 ACIN1Q9UKV3 1341 aaKnown RBP16.82■□□□□ 0.28
PCDHA9-201ENST00000378122 NPM1P06748 294 aaKnown RBP eCLIP16.82■□□□□ 0.28
PCDHA9-201ENST00000378122 ANP32CO43423 234 aa16.78■□□□□ 0.28
PCDHA9-201ENST00000378122 TRHP20396 242 aaPredicted RBP16.76■□□□□ 0.27
PCDHA9-201ENST00000378122 CHGAP10645 457 aaKnown RBP16.74■□□□□ 0.27
PCDHA9-201ENST00000378122 ZNF777Q9ULD5 760 aaPredicted RBP16.73■□□□□ 0.27
PCDHA9-201ENST00000378122 P3H3Q8IVL6 736 aa16.7■□□□□ 0.26
PCDHA9-201ENST00000378122 ZBTB7CA1YPR0 619 aa16.65■□□□□ 0.26
PCDHA9-201ENST00000378122 ARID4BQ4LE39 1312 aaPredicted RBP16.58■□□□□ 0.24
PCDHA9-201ENST00000378122 C14orf37Q86TY3 774 aa16.57■□□□□ 0.24
PCDHA9-201ENST00000378122 ZBTB47Q9UFB7 747 aaPredicted RBP16.56■□□□□ 0.24
PCDHA9-201ENST00000378122 ANP32AP39687 249 aaKnown RBP16.54■□□□□ 0.24
PCDHA9-201ENST00000378122 NPM2Q86SE8 214 aaKnown RBP16.53■□□□□ 0.24
PCDHA9-201ENST00000378122 CANXP27824 592 aaKnown RBP16.52■□□□□ 0.24
PCDHA9-201ENST00000378122 HAP1P54257 671 aaPredicted RBP16.5■□□□□ 0.23
PCDHA9-201ENST00000378122 FKBP8Q14318 412 aa16.49■□□□□ 0.23
PCDHA9-201ENST00000378122 TULP1O00294 542 aaPredicted RBP16.47■□□□□ 0.23
PCDHA9-201ENST00000378122 NEFMP07197 916 aa16.45■□□□□ 0.22
PCDHA9-201ENST00000378122 AEBP2Q6ZN18 517 aaPredicted RBP16.45■□□□□ 0.22
PCDHA9-201ENST00000378122 EIF5BO60841 1220 aaKnown RBP16.44■□□□□ 0.22
PCDHA9-201ENST00000378122 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.37■□□□□ 0.21
PCDHA9-201ENST00000378122 DCAF1Q9Y4B6 1507 aa16.36■□□□□ 0.21
PCDHA9-201ENST00000378122 NCBP3Q53F19 620 aaKnown RBP16.32■□□□□ 0.2
PCDHA9-201ENST00000378122 NBR1Q14596 966 aa16.32■□□□□ 0.2
PCDHA9-201ENST00000378122 CSRNP3Q8WYN3 585 aa16.31■□□□□ 0.2
PCDHA9-201ENST00000378122 ARXQ96QS3 562 aa16.31■□□□□ 0.2
PCDHA9-201ENST00000378122 KCNH8Q96L42 1107 aa16.3■□□□□ 0.2
PCDHA9-201ENST00000378122 HNRNPUQ00839 825 aaKnown RBP eCLIP16.29■□□□□ 0.2
PCDHA9-201ENST00000378122 DDX10Q13206 875 aaKnown RBP16.28■□□□□ 0.2
PCDHA9-201ENST00000378122 FAM9BQ8IZU0 186 aa16.27■□□□□ 0.2
PCDHA9-201ENST00000378122 CHMP7Q8WUX9 453 aaPredicted RBP16.27■□□□□ 0.2
PCDHA9-201ENST00000378122 SALL2Q9Y467 1007 aaPredicted RBP16.27■□□□□ 0.19
PCDHA9-201ENST00000378122 TONSLQ96HA7 1378 aa16.24■□□□□ 0.19
PCDHA9-201ENST00000378122 PPP1R15AO75807 674 aaPredicted RBP16.24■□□□□ 0.19
PCDHA9-201ENST00000378122 LMOD2Q6P5Q4 547 aa16.23■□□□□ 0.19
PCDHA9-201ENST00000378122 SCRIBQ14160 1630 aa16.21■□□□□ 0.19
PCDHA9-201ENST00000378122 ANP32BQ92688 251 aaKnown RBP16.19■□□□□ 0.18
PCDHA9-201ENST00000378122 TAOK2Q9UL54 1235 aa16.19■□□□□ 0.18
PCDHA9-201ENST00000378122 NPHP1O15259 732 aa16.18■□□□□ 0.18
PCDHA9-201ENST00000378122 GLIPR1L2Q4G1C9 344 aa16.17■□□□□ 0.18
PCDHA9-201ENST00000378122 MIER1Q8N108 512 aa16.17■□□□□ 0.18
PCDHA9-201ENST00000378122 IRX6P78412 446 aaPredicted RBP16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms