Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 AC010141.1-201ENST00000411585 623 ntBASIC13.96□□□□□ -0.17
LIM2P55344 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC13.96□□□□□ -0.17
LIM2P55344 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.96□□□□□ -0.17
LIM2P55344 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
LIM2P55344 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC13.96□□□□□ -0.17
LIM2P55344 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.96□□□□□ -0.17
LIM2P55344 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.96□□□□□ -0.17
LIM2P55344 EEF1DP1-201ENST00000585891 896 ntBASIC13.96□□□□□ -0.17
LIM2P55344 AC009542.2-202ENST00000619004 1067 ntBASIC13.96□□□□□ -0.17
LIM2P55344 MVK-217ENST00000639206 367 ntTSL 5 BASIC13.96□□□□□ -0.17
LIM2P55344 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.96□□□□□ -0.17
LIM2P55344 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIM2P55344 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LIM2P55344 OR2I1P-209ENST00000641730 5365 ntBASIC13.96□□□□□ -0.18
LIM2P55344 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LIM2P55344 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LIM2P55344 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
LIM2P55344 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LIM2P55344 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
LIM2P55344 MYADML-201ENST00000474610 2147 ntBASIC13.96□□□□□ -0.18
LIM2P55344 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LIM2P55344 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
LIM2P55344 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
LIM2P55344 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC13.96□□□□□ -0.18
LIM2P55344 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC13.95□□□□□ -0.18
LIM2P55344 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.95□□□□□ -0.18
LIM2P55344 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
LIM2P55344 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.95□□□□□ -0.18
LIM2P55344 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.95□□□□□ -0.18
LIM2P55344 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
LIM2P55344 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 TISP43-201ENST00000409793 538 ntTSL 4 BASIC13.95□□□□□ -0.18
LIM2P55344 AC079178.1-201ENST00000420915 656 ntBASIC13.95□□□□□ -0.18
LIM2P55344 CICP12-201ENST00000455801 843 ntBASIC13.95□□□□□ -0.18
LIM2P55344 AC100850.1-201ENST00000506768 649 ntBASIC13.95□□□□□ -0.18
LIM2P55344 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.95□□□□□ -0.18
LIM2P55344 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.95□□□□□ -0.18
LIM2P55344 ACR-203ENST00000529621 708 ntTSL 5 BASIC13.95□□□□□ -0.18
LIM2P55344 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC13.95□□□□□ -0.18
LIM2P55344 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC13.95□□□□□ -0.18
LIM2P55344 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
LIM2P55344 CYGB-203ENST00000589145 788 ntTSL 3 BASIC13.95□□□□□ -0.18
LIM2P55344 AL008721.1-201ENST00000609964 604 ntBASIC13.95□□□□□ -0.18
LIM2P55344 Six3os1_5.1-201ENST00000611000 271 ntBASIC13.95□□□□□ -0.18
LIM2P55344 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC13.95□□□□□ -0.18
LIM2P55344 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
LIM2P55344 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC13.95□□□□□ -0.18
LIM2P55344 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.95□□□□□ -0.18
LIM2P55344 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
LIM2P55344 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC13.95□□□□□ -0.18
LIM2P55344 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIM2P55344 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC13.95□□□□□ -0.18
LIM2P55344 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
LIM2P55344 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 KHSRPP1-201ENST00000427983 1768 ntBASIC13.94□□□□□ -0.18
LIM2P55344 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
LIM2P55344 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 MIR326-201ENST00000362220 95 ntBASIC13.94□□□□□ -0.18
LIM2P55344 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms