Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC17.07■□□□□ 0.32
COL4A5P29400 PRMT1P1-201ENST00000604252 1009 ntBASIC17.07■□□□□ 0.32
COL4A5P29400 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC17.07■□□□□ 0.32
COL4A5P29400 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL4A5P29400 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A5P29400 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC17.06■□□□□ 0.32
COL4A5P29400 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A5P29400 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC17.06■□□□□ 0.32
COL4A5P29400 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A5P29400 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A5P29400 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A5P29400 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A5P29400 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A5P29400 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A5P29400 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC17.06■□□□□ 0.32
COL4A5P29400 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
COL4A5P29400 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A5P29400 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A5P29400 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
COL4A5P29400 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC17.06■□□□□ 0.32
COL4A5P29400 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
COL4A5P29400 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC17.06■□□□□ 0.32
COL4A5P29400 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC17.06■□□□□ 0.32
COL4A5P29400 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A5P29400 FBXO36P1-201ENST00000579006 471 ntBASIC17.06■□□□□ 0.32
COL4A5P29400 MIR4746-201ENST00000579802 71 ntBASIC17.06■□□□□ 0.32
COL4A5P29400 TYMSP2-201ENST00000589501 424 ntBASIC17.06■□□□□ 0.32
COL4A5P29400 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC17.06■□□□□ 0.32
COL4A5P29400 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC17.06■□□□□ 0.32
COL4A5P29400 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC17.06■□□□□ 0.32
COL4A5P29400 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A5P29400 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
COL4A5P29400 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A5P29400 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A5P29400 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC17.06■□□□□ 0.32
COL4A5P29400 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
COL4A5P29400 TBC1D27-202ENST00000424239 1573 ntBASIC17.06■□□□□ 0.32
COL4A5P29400 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A5P29400 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL4A5P29400 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A5P29400 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A5P29400 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC17.05■□□□□ 0.32
COL4A5P29400 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A5P29400 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A5P29400 AJ011931.1-201ENST00000618749 2492 ntBASIC17.05■□□□□ 0.32
COL4A5P29400 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A5P29400 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.05■□□□□ 0.32
COL4A5P29400 HYMAI-201ENST00000635591 3347 ntBASIC17.05■□□□□ 0.32
COL4A5P29400 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A5P29400 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A5P29400 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A5P29400 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A5P29400 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
COL4A5P29400 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A5P29400 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC17.05■□□□□ 0.32
COL4A5P29400 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
COL4A5P29400 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
COL4A5P29400 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A5P29400 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
COL4A5P29400 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC17.05■□□□□ 0.32
COL4A5P29400 NALT1-202ENST00000450304 437 ntTSL 3 BASIC17.05■□□□□ 0.32
COL4A5P29400 PMEL-214ENST00000550447 901 ntTSL 3 BASIC17.05■□□□□ 0.32
COL4A5P29400 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC17.05■□□□□ 0.32
COL4A5P29400 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
COL4A5P29400 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
COL4A5P29400 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A5P29400 URAHP-205ENST00000610227 398 ntBASIC17.05■□□□□ 0.32
COL4A5P29400 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC17.05■□□□□ 0.32
COL4A5P29400 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
COL4A5P29400 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A5P29400 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC17.05■□□□□ 0.32
COL4A5P29400 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC17.05■□□□□ 0.32
COL4A5P29400 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.05■□□□□ 0.32
COL4A5P29400 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A5P29400 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
COL4A5P29400 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A5P29400 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A5P29400 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC17.05■□□□□ 0.32
COL4A5P29400 AC007952.5-201ENST00000572818 1486 ntBASIC17.05■□□□□ 0.32
COL4A5P29400 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
COL4A5P29400 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC17.05■□□□□ 0.32
COL4A5P29400 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A5P29400 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL4A5P29400 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.05■□□□□ 0.32
COL4A5P29400 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
COL4A5P29400 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC17.05■□□□□ 0.32
COL4A5P29400 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A5P29400 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A5P29400 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A5P29400 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A5P29400 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC17.04■□□□□ 0.32
COL4A5P29400 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC17.04■□□□□ 0.32
COL4A5P29400 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC17.04■□□□□ 0.32
COL4A5P29400 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A5P29400 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC17.04■□□□□ 0.32
COL4A5P29400 AC120498.7-201ENST00000562876 330 ntBASIC17.04■□□□□ 0.32
COL4A5P29400 RN7SL121P-201ENST00000584223 273 ntBASIC17.04■□□□□ 0.32
COL4A5P29400 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A5P29400 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A5P29400 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms