Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.47■□□□□ 0.07
BDNFP23560 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
BDNFP23560 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
BDNFP23560 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.47■□□□□ 0.07
BDNFP23560 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.47■□□□□ 0.07
BDNFP23560 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC15.47■□□□□ 0.07
BDNFP23560 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 KRTAP19-9P-201ENST00000421795 191 ntBASIC15.47■□□□□ 0.07
BDNFP23560 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC15.47■□□□□ 0.07
BDNFP23560 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC15.47■□□□□ 0.07
BDNFP23560 IGHJ2P-201ENST00000454480 60 ntBASIC15.47■□□□□ 0.07
BDNFP23560 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
BDNFP23560 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC15.47■□□□□ 0.07
BDNFP23560 FADS2-212ENST00000522639 360 ntTSL 5 BASIC15.47■□□□□ 0.07
BDNFP23560 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC15.47■□□□□ 0.07
BDNFP23560 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC15.47■□□□□ 0.07
BDNFP23560 AC009779.1-201ENST00000551138 283 ntBASIC15.47■□□□□ 0.07
BDNFP23560 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC15.47■□□□□ 0.07
BDNFP23560 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC15.47■□□□□ 0.07
BDNFP23560 FADS2-215ENST00000574708 385 ntTSL 3 BASIC15.47■□□□□ 0.07
BDNFP23560 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC15.47■□□□□ 0.07
BDNFP23560 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
BDNFP23560 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC15.47■□□□□ 0.07
BDNFP23560 AL805961.1-203ENST00000641078 1258 ntBASIC15.47■□□□□ 0.07
BDNFP23560 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.47■□□□□ 0.07
BDNFP23560 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
BDNFP23560 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
BDNFP23560 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
BDNFP23560 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.47■□□□□ 0.07
BDNFP23560 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
BDNFP23560 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.46■□□□□ 0.07
BDNFP23560 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
BDNFP23560 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
BDNFP23560 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
BDNFP23560 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
BDNFP23560 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
BDNFP23560 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.46■□□□□ 0.07
BDNFP23560 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
BDNFP23560 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
BDNFP23560 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
BDNFP23560 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
BDNFP23560 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
BDNFP23560 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
BDNFP23560 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.46■□□□□ 0.07
BDNFP23560 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
BDNFP23560 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
BDNFP23560 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
BDNFP23560 MIR769-201ENST00000390225 118 ntBASIC15.46■□□□□ 0.07
BDNFP23560 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC15.46■□□□□ 0.07
BDNFP23560 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC15.46■□□□□ 0.07
BDNFP23560 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
BDNFP23560 RCC2P8-201ENST00000502779 1035 ntBASIC15.46■□□□□ 0.07
BDNFP23560 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC15.46■□□□□ 0.07
BDNFP23560 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC15.46■□□□□ 0.07
BDNFP23560 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC15.46■□□□□ 0.07
BDNFP23560 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC15.46■□□□□ 0.07
BDNFP23560 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
BDNFP23560 AC133540.1-201ENST00000620845 1019 ntBASIC15.46■□□□□ 0.07
BDNFP23560 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC15.46■□□□□ 0.07
BDNFP23560 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
BDNFP23560 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
BDNFP23560 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.46■□□□□ 0.07
BDNFP23560 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC15.46■□□□□ 0.07
BDNFP23560 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
BDNFP23560 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
BDNFP23560 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.46■□□□□ 0.07
BDNFP23560 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
BDNFP23560 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
BDNFP23560 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
BDNFP23560 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
BDNFP23560 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
BDNFP23560 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
BDNFP23560 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
BDNFP23560 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
BDNFP23560 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
BDNFP23560 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
BDNFP23560 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
BDNFP23560 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
BDNFP23560 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC15.45■□□□□ 0.06
BDNFP23560 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms