Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 FOXM1-201ENST00000342628 3475 ntTSL 1 (best) BASIC9.95□□□□□ -0.829e-7■□□□□ 9
YBX3P16989 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC9.37□□□□□ -0.914e-10■□□□□ 9
YBX3P16989 LSM5-210ENST00000480956 1736 ntTSL 39.21□□□□□ -0.946e-9■□□□□ 9
YBX3P16989 PKP4-210ENST00000480171 2772 ntTSL 28.79□□□□□ -11e-8■□□□□ 9
YBX3P16989 LSM5-208ENST00000450169 2258 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.016e-9■□□□□ 9
YBX3P16989 MPHOSPH9-214ENST00000541823 586 ntTSL 48.51□□□□□ -1.059e-7■□□□□ 9
YBX3P16989 CRBN-203ENST00000432408 2203 ntAPPRIS ALT1 TSL 1 (best) BASIC8.33□□□□□ -1.089e-7■□□□□ 9
YBX3P16989 MPHOSPH9-221ENST00000606321 662 ntAPPRIS ALT2 TSL 38.29□□□□□ -1.089e-7■□□□□ 9
YBX3P16989 CRBN-201ENST00000231948 2206 ntAPPRIS P3 TSL 1 (best) BASIC8.21□□□□□ -1.19e-7■□□□□ 9
YBX3P16989 LSM5-203ENST00000409782 649 ntTSL 5 BASIC7.68□□□□□ -1.186e-9■□□□□ 9
YBX3P16989 CRBN-210ENST00000491834 5628 ntTSL 1 (best)7.46□□□□□ -1.229e-7■□□□□ 9
YBX3P16989 TBC1D23-203ENST00000471098 559 ntTSL 47.28□□□□□ -1.241e-8■□□□□ 9
YBX3P16989 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC7.22□□□□□ -1.259e-7■□□□□ 9
YBX3P16989 LSM5-206ENST00000409987 504 ntTSL 5 BASIC7.01□□□□□ -1.296e-9■□□□□ 9
YBX3P16989 USP15-207ENST00000547317 499 ntTSL 36.98□□□□□ -1.294e-10■□□□□ 9
YBX3P16989 CRBN-202ENST00000424814 2038 ntTSL 56.89□□□□□ -1.319e-7■□□□□ 9
YBX3P16989 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC6.64□□□□□ -1.359e-7■□□□□ 9
YBX3P16989 LSM5-205ENST00000409952 687 ntTSL 4 BASIC6.25□□□□□ -1.416e-9■□□□□ 9
YBX3P16989 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.416e-9■□□□□ 9
YBX3P16989 ZFR-206ENST00000510369 1551 ntTSL 1 (best)6.05□□□□□ -1.446e-9■□□□□ 9
YBX3P16989 HELZ-206ENST00000579953 6365 ntTSL 25.98□□□□□ -1.456e-9■□□□□ 9
YBX3P16989 DYNC1H1-202ENST00000553423 539 ntTSL 45.83□□□□□ -1.489e-7■□□□□ 9
YBX3P16989 CRBN-209ENST00000488263 4528 ntTSL 1 (best)5.83□□□□□ -1.489e-7■□□□□ 9
YBX3P16989 ZFR-207ENST00000514356 3109 ntTSL 24.46□□□□□ -1.76e-9■□□□□ 9
YBX3P16989 Y_RNA.571-201ENST00000384753 98 ntBASIC4.41□□□□□ -1.71e-8■□□□□ 9
YBX3P16989 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.35□□□□□ -1.876e-9■□□□□ 9
YBX3P16989 HSPH1-207ENST00000626866 4381 ntTSL 22.18□□□□□ -2.069e-7■□□□□ 9
YBX3P16989 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC22.02■■□□□ 1.122e-8■□□□□ 9
YBX3P16989 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.862e-8■□□□□ 9
YBX3P16989 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.662e-8■□□□□ 9
YBX3P16989 UBE2E3-206ENST00000602479 752 ntTSL 329.45■■■□□ 2.319e-8■□□□□ 9
YBX3P16989 UBE2E3-204ENST00000602303 654 ntTSL 59.85□□□□□ -0.839e-8■□□□□ 9
YBX3P16989 DCAF7-202ENST00000431926 1354 ntTSL 1 (best)19.27■□□□□ 0.682e-8■□□□□ 9
YBX3P16989 DCAF7-203ENST00000580091 325 ntTSL 314.22□□□□□ -0.132e-8■□□□□ 9
YBX3P16989 DCAF7-205ENST00000614556 6340 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.682e-8■□□□□ 9
YBX3P16989 DARS-210ENST00000489964 827 ntTSL 213.11□□□□□ -0.312e-9■□□□□ 9
YBX3P16989 DARS-202ENST00000422708 623 ntTSL 29.16□□□□□ -0.942e-9■□□□□ 9
YBX3P16989 DARS-211ENST00000491481 549 ntTSL 28.54□□□□□ -1.042e-9■□□□□ 9
YBX3P16989 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC28.78■■■□□ 2.23e-39■□□□□ 9
YBX3P16989 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.83e-39■□□□□ 9
YBX3P16989 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.373e-39■□□□□ 9
YBX3P16989 RPL29-208ENST00000492277 537 ntTSL 323.07■■□□□ 1.283e-39■□□□□ 9
YBX3P16989 RPL29-201ENST00000294189 723 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.153e-39■□□□□ 9
YBX3P16989 RPL29-205ENST00000480306 719 ntTSL 212.2□□□□□ -0.463e-39■□□□□ 9
YBX3P16989 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.62□□□□□ -1.513e-39■□□□□ 9
YBX3P16989 EXOC6-202ENST00000371543 2714 ntTSL 2 BASIC10.86□□□□□ -0.673e-7■□□□□ 9
YBX3P16989 EXOC6-204ENST00000443748 3310 ntTSL 1 (best) BASIC9.58□□□□□ -0.883e-7■□□□□ 9
YBX3P16989 GPBP1-208ENST00000514387 3310 ntAPPRIS ALT2 TSL 1 (best) BASIC9.04□□□□□ -0.962e-8■□□□□ 9
YBX3P16989 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC8.42□□□□□ -1.062e-8■□□□□ 9
YBX3P16989 EXOC6-201ENST00000260762 3564 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.083e-7■□□□□ 9
YBX3P16989 GPBP1-206ENST00000513524 529 ntTSL 57.65□□□□□ -1.182e-8■□□□□ 9
YBX3P16989 GPBP1-209ENST00000515484 962 ntTSL 27.19□□□□□ -1.262e-8■□□□□ 9
YBX3P16989 GPBP1-202ENST00000309096 1385 ntTSL 26.99□□□□□ -1.292e-8■□□□□ 9
YBX3P16989 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.572e-8■□□□□ 9
YBX3P16989 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.572e-8■□□□□ 9
YBX3P16989 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.652e-8■□□□□ 9
YBX3P16989 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.42□□□□□ -1.863e-7■□□□□ 9
YBX3P16989 FOXK2-202ENST00000473637 3462 ntTSL 1 (best)21.8■■□□□ 1.082e-6■□□□□ 9
YBX3P16989 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.052e-6■□□□□ 9
YBX3P16989 HBG1-202ENST00000632727 369 ntTSL 3 BASIC10.56□□□□□ -0.721e-323■□□□□ 9
YBX3P16989 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.051e-323■□□□□ 9
YBX3P16989 CKAP5-209ENST00000528593 366 ntTSL 26.9□□□□□ -1.38e-11■□□□□ 9
YBX3P16989 POLD2-204ENST00000433715 765 ntTSL 327.36■■□□□ 1.972e-7■□□□□ 9
YBX3P16989 POLD2-213ENST00000470867 678 ntTSL 522.42■■□□□ 1.182e-7■□□□□ 9
YBX3P16989 POLD2-203ENST00000418438 556 ntTSL 420.8■□□□□ 0.922e-7■□□□□ 9
YBX3P16989 POLD2-210ENST00000463464 707 ntTSL 215.97■□□□□ 0.152e-7■□□□□ 9
YBX3P16989 POLD2-208ENST00000456038 665 ntTSL 314.7□□□□□ -0.062e-7■□□□□ 9
YBX3P16989 PDLIM1-203ENST00000490391 458 ntTSL 210.78□□□□□ -0.683e-11■□□□□ 9
YBX3P16989 SFT2D1-203ENST00000479490 2061 ntTSL 1 (best)12.3□□□□□ -0.444e-10■□□□□ 9
YBX3P16989 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.091e-7■□□□□ 9
YBX3P16989 ATN1-202ENST00000396684 4290 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.351e-7■□□□□ 9
YBX3P16989 C8orf59-202ENST00000518786 827 ntTSL 211.03□□□□□ -0.641e-9■□□□□ 9
YBX3P16989 C8orf59-203ENST00000521286 759 ntTSL 310.14□□□□□ -0.791e-9■□□□□ 9
YBX3P16989 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.582e-7■□□□□ 9
YBX3P16989 TANK-214ENST00000456358 564 ntTSL 518.14■□□□□ 0.492e-7■□□□□ 9
YBX3P16989 TANK-215ENST00000457887 762 ntTSL 518.02■□□□□ 0.482e-7■□□□□ 9
YBX3P16989 TANK-207ENST00000429217 762 ntTSL 512.08□□□□□ -0.482e-7■□□□□ 9
YBX3P16989 TANK-212ENST00000440506 550 ntTSL 39.97□□□□□ -0.812e-7■□□□□ 9
YBX3P16989 TANK-203ENST00000402568 878 ntTSL 5 BASIC9.4□□□□□ -0.92e-7■□□□□ 9
YBX3P16989 TANK-213ENST00000441987 533 ntTSL 58.55□□□□□ -1.042e-7■□□□□ 9
YBX3P16989 TANK-205ENST00000405852 2155 ntTSL 5 BASIC8.15□□□□□ -1.112e-7■□□□□ 9
YBX3P16989 TANK-206ENST00000406287 875 ntTSL 5 BASIC7.69□□□□□ -1.182e-7■□□□□ 9
YBX3P16989 TANK-218ENST00000468831 905 ntTSL 1 (best)6.84□□□□□ -1.312e-7■□□□□ 9
YBX3P16989 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC6.71□□□□□ -1.342e-7■□□□□ 9
YBX3P16989 TANK-208ENST00000432002 600 ntTSL 55.19□□□□□ -1.582e-7■□□□□ 9
YBX3P16989 TANK-209ENST00000432692 576 ntTSL 54.84□□□□□ -1.632e-7■□□□□ 9
YBX3P16989 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.72e-7■□□□□ 9
YBX3P16989 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC24.06■■□□□ 1.442e-7■□□□□ 9
YBX3P16989 CCNC-217ENST00000523985 958 ntTSL 2 BASIC18.57■□□□□ 0.562e-7■□□□□ 9
YBX3P16989 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.78■□□□□ 0.282e-7■□□□□ 9
YBX3P16989 CCNC-216ENST00000523961 1152 ntTSL 516.07■□□□□ 0.162e-7■□□□□ 9
YBX3P16989 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.042e-7■□□□□ 9
YBX3P16989 CCNC-205ENST00000484049 1412 ntTSL 514.21□□□□□ -0.132e-7■□□□□ 9
YBX3P16989 CCNC-203ENST00000369220 2118 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.322e-7■□□□□ 9
YBX3P16989 CCNC-215ENST00000523799 1035 ntTSL 3 BASIC12.28□□□□□ -0.442e-7■□□□□ 9
YBX3P16989 CCNC-201ENST00000326298 2212 ntTSL 1 (best)11.13□□□□□ -0.632e-7■□□□□ 9
YBX3P16989 PTBP1-218ENST00000592804 742 ntTSL 225.12■■□□□ 1.612e-29■□□□□ 9
YBX3P16989 ACSM3-208ENST00000563914 771 ntTSL 56.37□□□□□ -1.394e-9■□□□□ 9
YBX3P16989 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.171e-9■□□□□ 9
YBX3P16989 PRDX4-204ENST00000439422 554 ntTSL 36.11□□□□□ -1.431e-9■□□□□ 9
Retrieved 100 of 29,075 protein–RNA pairs in 117.4 ms