RNA–Protein interactions for RNA: ENST00000490391.1

PDLIM1-203, Transcript of PDZ and LIM domain 1, humanhuman

TSL 2

Gene PDLIM1, Length 458 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-203ENST00000490391 AEBP2Q6ZN18 517 aaPredicted RBP26.37■■□□□ 1.81
PDLIM1-203ENST00000490391 CHIC1Q5VXU3 224 aa24.65■■□□□ 1.54
PDLIM1-203ENST00000490391 SENP3Q9H4L4 574 aaPredicted RBP22.61■■□□□ 1.21
PDLIM1-203ENST00000490391 PHF23Q9BUL5 403 aaPredicted RBP22.22■■□□□ 1.15
PDLIM1-203ENST00000490391 FOXD1Q16676 465 aa21.15■□□□□ 0.98
PDLIM1-203ENST00000490391 POTEDQ86YR6 584 aa20.72■□□□□ 0.91
PDLIM1-203ENST00000490391 MSH5O43196 834 aa20.06■□□□□ 0.8
PDLIM1-203ENST00000490391 PIAS4Q8N2W9 510 aaPredicted RBP19.58■□□□□ 0.72
PDLIM1-203ENST00000490391 PPP6R1Q9UPN7 881 aa19.26■□□□□ 0.67
PDLIM1-203ENST00000490391 PLPPR3Q6T4P5 718 aa19.2■□□□□ 0.66
PDLIM1-203ENST00000490391 ADRA2BP18089 450 aa19.15■□□□□ 0.66
PDLIM1-203ENST00000490391 NISCHQ9Y2I1 1504 aa18.84■□□□□ 0.61
PDLIM1-203ENST00000490391 DMRT2Q9Y5R5 561 aa17.83■□□□□ 0.44
PDLIM1-203ENST00000490391 MAPK8IP2Q13387 824 aaPredicted RBP17.79■□□□□ 0.44
PDLIM1-203ENST00000490391 ABCC9O60706 1549 aa17.74■□□□□ 0.43
PDLIM1-203ENST00000490391 CACNB1Q02641 598 aaPredicted RBP17.61■□□□□ 0.41
PDLIM1-203ENST00000490391 SCAF1Q9H7N4 1312 aaKnown RBP17.55■□□□□ 0.4
PDLIM1-203ENST00000490391 DNAJC5BQ9UF47 199 aa17.25■□□□□ 0.35
PDLIM1-203ENST00000490391 CCDC180Q9P1Z9 1646 aa17.18■□□□□ 0.34
PDLIM1-203ENST00000490391 DCAF8L1A6NGE4 600 aa17.09■□□□□ 0.33
PDLIM1-203ENST00000490391 RNF39Q9H2S5 420 aa17.06■□□□□ 0.32
PDLIM1-203ENST00000490391 HOXD11P31277 338 aaPredicted RBP16.92■□□□□ 0.3
PDLIM1-203ENST00000490391 C1QBPQ07021 282 aaKnown RBP16.78■□□□□ 0.28
PDLIM1-203ENST00000490391 PPP4R3CPQ6ZMV5 832 aa16.73■□□□□ 0.27
PDLIM1-203ENST00000490391 RB1CC1Q8TDY2 1594 aa16.61■□□□□ 0.25
PDLIM1-203ENST00000490391 RNF216Q9NWF9 866 aaPredicted RBP16.61■□□□□ 0.25
PDLIM1-203ENST00000490391 CNKSR2Q8WXI2 1034 aa16.58■□□□□ 0.24
PDLIM1-203ENST00000490391 PABPN1Q86U42 306 aaKnown RBP eCLIP16.4■□□□□ 0.22
PDLIM1-203ENST00000490391 NACADO15069 1562 aa16.37■□□□□ 0.21
PDLIM1-203ENST00000490391 UNC13AQ9UPW8 1703 aa16.29■□□□□ 0.2
PDLIM1-203ENST00000490391 DNAJC5Q9H3Z4 198 aa16.25■□□□□ 0.19
PDLIM1-203ENST00000490391 BICRAQ9NZM4 1560 aa16.24■□□□□ 0.19
PDLIM1-203ENST00000490391 POTEHQ6S545 545 aa16.1■□□□□ 0.17
PDLIM1-203ENST00000490391 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.09■□□□□ 0.17
PDLIM1-203ENST00000490391 CECR2Q9BXF3 1484 aa16.06■□□□□ 0.16
PDLIM1-203ENST00000490391 CC2D2AQ9P2K1 1620 aa16.02■□□□□ 0.16
PDLIM1-203ENST00000490391 DCAF8L2P0C7V8 631 aa16.02■□□□□ 0.16
PDLIM1-203ENST00000490391 MYO15BQ96JP2 1530 aa15.99■□□□□ 0.15
PDLIM1-203ENST00000490391 SHROOM4Q9ULL8 1493 aa15.92■□□□□ 0.14
PDLIM1-203ENST00000490391 NCBP3Q53F19 620 aaKnown RBP15.89■□□□□ 0.13
PDLIM1-203ENST00000490391 EIF4G1Q04637 1599 aaKnown RBP15.85■□□□□ 0.13
PDLIM1-203ENST00000490391 DSG3P32926 999 aa15.75■□□□□ 0.11
PDLIM1-203ENST00000490391 U3KPZ7 1027 aaPredicted RBP15.68■□□□□ 0.1
PDLIM1-203ENST00000490391 NPM3O75607 178 aaKnown RBP15.65■□□□□ 0.1
PDLIM1-203ENST00000490391 CAPN15O75808 1086 aa15.65■□□□□ 0.1
PDLIM1-203ENST00000490391 SPINK5Q9NQ38 1064 aaPredicted RBP15.65■□□□□ 0.1
PDLIM1-203ENST00000490391 SCRIBQ14160 1630 aa15.58■□□□□ 0.09
PDLIM1-203ENST00000490391 CUX2O14529 1486 aa15.56■□□□□ 0.08
PDLIM1-203ENST00000490391 DCAF1Q9Y4B6 1507 aa15.54■□□□□ 0.08
PDLIM1-203ENST00000490391 ZCCHC6Q5VYS8 1495 aaKnown RBP15.5■□□□□ 0.07
PDLIM1-203ENST00000490391 ERCC6Q03468 1493 aa15.33■□□□□ 0.04
PDLIM1-203ENST00000490391 TRHP20396 242 aaPredicted RBP15.23■□□□□ 0.03
PDLIM1-203ENST00000490391 ABCB7O75027 752 aa15.21■□□□□ 0.03
PDLIM1-203ENST00000490391 ZNF219Q9P2Y4 722 aaPredicted RBP15.21■□□□□ 0.03
PDLIM1-203ENST00000490391 TRIM41Q8WV44 630 aa15.2■□□□□ 0.02
PDLIM1-203ENST00000490391 APLP2Q06481 763 aa15.19■□□□□ 0.02
PDLIM1-203ENST00000490391 NCAPD3P42695 1498 aa15.14■□□□□ 0.01
PDLIM1-203ENST00000490391 SLC4A2P04920 1241 aa15.13■□□□□ 0.01
PDLIM1-203ENST00000490391 THOC2Q8NI27 1593 aaKnown RBP15.1■□□□□ 0.01
PDLIM1-203ENST00000490391 NESP48681 1621 aa15.1■□□□□ 0.01
PDLIM1-203ENST00000490391 RBM42Q9BTD8 480 aaKnown RBP15.04■□□□□ -0
PDLIM1-203ENST00000490391 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.02■□□□□ -0
PDLIM1-203ENST00000490391 HNRNPUL2Q1KMD3 747 aaKnown RBP15.02■□□□□ -0
PDLIM1-203ENST00000490391 ATAD2BQ9ULI0 1458 aa15□□□□□ -0.01
PDLIM1-203ENST00000490391 HMGXB3Q12766 1538 aa14.97□□□□□ -0.01
PDLIM1-203ENST00000490391 CHRDL2Q6WN34 429 aa14.97□□□□□ -0.01
PDLIM1-203ENST00000490391 SMARCA2P51531 1590 aa14.9□□□□□ -0.02
PDLIM1-203ENST00000490391 SAMD1Q6SPF0 538 aaPredicted RBP14.9□□□□□ -0.02
PDLIM1-203ENST00000490391 LAMC3Q9Y6N6 1575 aa14.88□□□□□ -0.03
PDLIM1-203ENST00000490391 KIF21AQ7Z4S6 1674 aa14.87□□□□□ -0.03
PDLIM1-203ENST00000490391 SMARCA4P51532 1647 aa14.83□□□□□ -0.04
PDLIM1-203ENST00000490391 BAZ1BQ9UIG0 1483 aaKnown RBP14.79□□□□□ -0.04
PDLIM1-203ENST00000490391 BAZ1AQ9NRL2 1556 aaPredicted RBP14.78□□□□□ -0.04
PDLIM1-203ENST00000490391 PDS5BQ9NTI5 1447 aa14.78□□□□□ -0.04
PDLIM1-203ENST00000490391 SP7Q8TDD2 431 aaPredicted RBP14.78□□□□□ -0.04
PDLIM1-203ENST00000490391 KCNA4P22459 653 aa14.74□□□□□ -0.05
PDLIM1-203ENST00000490391 WDR62O43379 1518 aa14.73□□□□□ -0.05
PDLIM1-203ENST00000490391 PEG3Q9GZU2 1588 aa14.73□□□□□ -0.05
PDLIM1-203ENST00000490391 MRC2Q9UBG0 1479 aa14.71□□□□□ -0.05
PDLIM1-203ENST00000490391 POLA2Q14181 598 aa14.69□□□□□ -0.06
PDLIM1-203ENST00000490391 OSCARQ8IYS5 282 aa14.69□□□□□ -0.06
PDLIM1-203ENST00000490391 RIMBP3CA6NJZ7 1639 aa14.63□□□□□ -0.07
PDLIM1-203ENST00000490391 RIMBP3BA6NNM3 1639 aa14.63□□□□□ -0.07
PDLIM1-203ENST00000490391 RIMBP3Q9UFD9 1639 aa14.63□□□□□ -0.07
PDLIM1-203ENST00000490391 CADPSQ9ULU8 1353 aa14.62□□□□□ -0.07
PDLIM1-203ENST00000490391 AKT1S1Q96B36 256 aa14.56□□□□□ -0.08
PDLIM1-203ENST00000490391 ARHGEF11O15085 1522 aa14.52□□□□□ -0.08
PDLIM1-203ENST00000490391 MROH2BQ7Z745 1585 aa14.51□□□□□ -0.09
PDLIM1-203ENST00000490391 CEP164Q9UPV0 1460 aa14.51□□□□□ -0.09
PDLIM1-203ENST00000490391 MYCNP04198 464 aaPredicted RBP14.49□□□□□ -0.09
PDLIM1-203ENST00000490391 PIP4P2Q8N4L2 257 aa14.48□□□□□ -0.09
PDLIM1-203ENST00000490391 FANCD2Q9BXW9 1451 aa14.45□□□□□ -0.1
PDLIM1-203ENST00000490391 URB2Q14146 1524 aaKnown RBP14.41□□□□□ -0.1
PDLIM1-203ENST00000490391 REM2Q8IYK8 340 aaPredicted RBP14.41□□□□□ -0.1
PDLIM1-203ENST00000490391 HAX1O00165 279 aa14.38□□□□□ -0.11
PDLIM1-203ENST00000490391 CYB5RLQ6IPT4 315 aa14.38□□□□□ -0.11
PDLIM1-203ENST00000490391 ARAP1Q96P48 1450 aa14.36□□□□□ -0.11
PDLIM1-203ENST00000490391 ZBTB12Q9Y330 459 aaPredicted RBP14.35□□□□□ -0.11
PDLIM1-203ENST00000490391 CFTRP13569 1480 aa14.35□□□□□ -0.11
PDLIM1-203ENST00000490391 ZNF608Q9ULD9 1512 aaPredicted RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 113.7 ms