Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AC018529.2-202ENST00000611482 3087 ntBASIC14.3□□□□□ -0.12
TNFP01375 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
TNFP01375 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
TNFP01375 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
TNFP01375 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
TNFP01375 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
TNFP01375 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
TNFP01375 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.29□□□□□ -0.12
TNFP01375 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.29□□□□□ -0.12
TNFP01375 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.29□□□□□ -0.12
TNFP01375 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
TNFP01375 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC14.29□□□□□ -0.12
TNFP01375 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
TNFP01375 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
TNFP01375 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.29□□□□□ -0.12
TNFP01375 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
TNFP01375 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
TNFP01375 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
TNFP01375 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
TNFP01375 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
TNFP01375 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
TNFP01375 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC14.29□□□□□ -0.12
TNFP01375 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC14.29□□□□□ -0.12
TNFP01375 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC14.29□□□□□ -0.12
TNFP01375 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC14.29□□□□□ -0.12
TNFP01375 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC14.29□□□□□ -0.12
TNFP01375 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC14.29□□□□□ -0.12
TNFP01375 HLA-DPB2-205ENST00000435074 1188 ntBASIC14.29□□□□□ -0.12
TNFP01375 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC14.29□□□□□ -0.12
TNFP01375 AC116345.2-201ENST00000512837 523 ntBASIC14.29□□□□□ -0.12
TNFP01375 IGLV3-15-201ENST00000518356 244 ntBASIC14.29□□□□□ -0.12
TNFP01375 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC14.29□□□□□ -0.12
TNFP01375 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
TNFP01375 AC027237.1-201ENST00000560942 655 ntBASIC14.29□□□□□ -0.12
TNFP01375 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC14.29□□□□□ -0.12
TNFP01375 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC14.29□□□□□ -0.12
TNFP01375 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 AC124068.2-201ENST00000569473 1109 ntBASIC14.29□□□□□ -0.12
TNFP01375 AC006453.1-201ENST00000636037 1257 ntBASIC14.29□□□□□ -0.12
TNFP01375 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC14.29□□□□□ -0.12
TNFP01375 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC14.29□□□□□ -0.12
TNFP01375 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
TNFP01375 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC14.29□□□□□ -0.12
TNFP01375 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
TNFP01375 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC14.29□□□□□ -0.12
TNFP01375 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
TNFP01375 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC14.29□□□□□ -0.12
TNFP01375 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.29□□□□□ -0.12
TNFP01375 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.29□□□□□ -0.12
TNFP01375 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC14.29□□□□□ -0.12
TNFP01375 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.29□□□□□ -0.12
TNFP01375 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.29□□□□□ -0.12
TNFP01375 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TNFP01375 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.29□□□□□ -0.12
TNFP01375 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
TNFP01375 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
TNFP01375 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
TNFP01375 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC14.28□□□□□ -0.12
TNFP01375 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC14.28□□□□□ -0.12
TNFP01375 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
TNFP01375 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
TNFP01375 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.28□□□□□ -0.12
TNFP01375 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 331.7 ms