Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC12.41□□□□□ -0.42
ABCA1O95477 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
ABCA1O95477 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC12.41□□□□□ -0.42
ABCA1O95477 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC12.41□□□□□ -0.42
ABCA1O95477 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC12.41□□□□□ -0.42
ABCA1O95477 AC008805.1-201ENST00000590892 364 ntBASIC12.41□□□□□ -0.42
ABCA1O95477 IRF3-215ENST00000596822 823 ntTSL 3 BASIC12.41□□□□□ -0.42
ABCA1O95477 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
ABCA1O95477 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC12.41□□□□□ -0.42
ABCA1O95477 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC12.41□□□□□ -0.42
ABCA1O95477 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC12.41□□□□□ -0.42
ABCA1O95477 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC12.41□□□□□ -0.42
ABCA1O95477 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC12.41□□□□□ -0.42
ABCA1O95477 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 DKFZP434H168-201ENST00000567381 1905 ntBASIC12.41□□□□□ -0.42
ABCA1O95477 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 RN7SKP175-201ENST00000408472 289 ntBASIC12.41□□□□□ -0.42
ABCA1O95477 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC12.41□□□□□ -0.42
ABCA1O95477 AC078991.1-201ENST00000437297 610 ntBASIC12.41□□□□□ -0.42
ABCA1O95477 CHMP1AP1-201ENST00000445563 662 ntBASIC12.41□□□□□ -0.42
ABCA1O95477 FGFR3P1-201ENST00000449999 601 ntBASIC12.41□□□□□ -0.42
ABCA1O95477 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC12.41□□□□□ -0.42
ABCA1O95477 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC12.41□□□□□ -0.42
ABCA1O95477 CTBP2P4-201ENST00000513884 920 ntBASIC12.41□□□□□ -0.42
ABCA1O95477 AL109954.1-202ENST00000564051 2148 ntBASIC12.41□□□□□ -0.42
ABCA1O95477 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
ABCA1O95477 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC12.41□□□□□ -0.42
ABCA1O95477 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
ABCA1O95477 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC12.41□□□□□ -0.42
ABCA1O95477 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC12.41□□□□□ -0.42
ABCA1O95477 REXO1L5P-201ENST00000622260 2098 ntBASIC12.41□□□□□ -0.42
ABCA1O95477 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC12.41□□□□□ -0.42
ABCA1O95477 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC12.41□□□□□ -0.42
ABCA1O95477 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
ABCA1O95477 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
ABCA1O95477 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
ABCA1O95477 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC12.4□□□□□ -0.42
ABCA1O95477 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC12.4□□□□□ -0.42
ABCA1O95477 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
ABCA1O95477 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC12.4□□□□□ -0.42
ABCA1O95477 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC12.4□□□□□ -0.42
ABCA1O95477 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC12.4□□□□□ -0.42
ABCA1O95477 DNM1P30-201ENST00000563586 452 ntBASIC12.4□□□□□ -0.42
ABCA1O95477 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC12.4□□□□□ -0.42
ABCA1O95477 AC004466.1-201ENST00000599515 1080 ntBASIC12.4□□□□□ -0.42
ABCA1O95477 AC073352.2-201ENST00000609385 439 ntBASIC12.4□□□□□ -0.42
ABCA1O95477 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 AC006486.2-201ENST00000624246 2199 ntBASIC12.4□□□□□ -0.42
ABCA1O95477 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC12.4□□□□□ -0.42
ABCA1O95477 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC12.4□□□□□ -0.42
ABCA1O95477 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC12.4□□□□□ -0.42
ABCA1O95477 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC12.4□□□□□ -0.42
ABCA1O95477 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC12.4□□□□□ -0.42
ABCA1O95477 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC12.4□□□□□ -0.42
ABCA1O95477 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
ABCA1O95477 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA1O95477 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms