Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC23.65■■□□□ 1.38
CCHCR1Q8TD31 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC23.65■■□□□ 1.38
CCHCR1Q8TD31 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
CCHCR1Q8TD31 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CCHCR1Q8TD31 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CCHCR1Q8TD31 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC23.65■■□□□ 1.38
CCHCR1Q8TD31 CD37-213ENST00000598095 1598 ntTSL 2 BASIC23.65■■□□□ 1.38
CCHCR1Q8TD31 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CCHCR1Q8TD31 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.64■■□□□ 1.38
CCHCR1Q8TD31 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CCHCR1Q8TD31 YBX1P4-201ENST00000392794 808 ntBASIC23.64■■□□□ 1.37
CCHCR1Q8TD31 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC23.64■■□□□ 1.37
CCHCR1Q8TD31 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CCHCR1Q8TD31 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
CCHCR1Q8TD31 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CCHCR1Q8TD31 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
CCHCR1Q8TD31 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
CCHCR1Q8TD31 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC23.63■■□□□ 1.37
CCHCR1Q8TD31 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
CCHCR1Q8TD31 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC23.63■■□□□ 1.37
CCHCR1Q8TD31 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
CCHCR1Q8TD31 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CCHCR1Q8TD31 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC23.63■■□□□ 1.37
CCHCR1Q8TD31 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC23.63■■□□□ 1.37
CCHCR1Q8TD31 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC23.62■■□□□ 1.37
CCHCR1Q8TD31 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CCHCR1Q8TD31 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
CCHCR1Q8TD31 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
CCHCR1Q8TD31 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CCHCR1Q8TD31 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC23.62■■□□□ 1.37
CCHCR1Q8TD31 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CCHCR1Q8TD31 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CCHCR1Q8TD31 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC23.62■■□□□ 1.37
CCHCR1Q8TD31 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCHCR1Q8TD31 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCHCR1Q8TD31 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CCHCR1Q8TD31 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC23.61■■□□□ 1.37
CCHCR1Q8TD31 KRT8P33-201ENST00000508125 1423 ntBASIC23.61■■□□□ 1.37
CCHCR1Q8TD31 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC23.61■■□□□ 1.37
CCHCR1Q8TD31 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
CCHCR1Q8TD31 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
CCHCR1Q8TD31 MIR4508-201ENST00000584178 70 ntBASIC23.61■■□□□ 1.37
CCHCR1Q8TD31 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC23.61■■□□□ 1.37
CCHCR1Q8TD31 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCHCR1Q8TD31 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC23.61■■□□□ 1.37
CCHCR1Q8TD31 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC23.61■■□□□ 1.37
CCHCR1Q8TD31 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
CCHCR1Q8TD31 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC23.61■■□□□ 1.37
CCHCR1Q8TD31 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCHCR1Q8TD31 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCHCR1Q8TD31 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CCHCR1Q8TD31 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC23.6■■□□□ 1.37
CCHCR1Q8TD31 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCHCR1Q8TD31 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC23.6■■□□□ 1.37
CCHCR1Q8TD31 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCHCR1Q8TD31 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCHCR1Q8TD31 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCHCR1Q8TD31 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC23.59■■□□□ 1.37
CCHCR1Q8TD31 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
CCHCR1Q8TD31 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
CCHCR1Q8TD31 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCHCR1Q8TD31 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.59■■□□□ 1.37
CCHCR1Q8TD31 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CCHCR1Q8TD31 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCHCR1Q8TD31 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
CCHCR1Q8TD31 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
CCHCR1Q8TD31 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC23.58■■□□□ 1.37
CCHCR1Q8TD31 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC23.58■■□□□ 1.37
CCHCR1Q8TD31 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC23.58■■□□□ 1.37
CCHCR1Q8TD31 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
CCHCR1Q8TD31 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.36
CCHCR1Q8TD31 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
CCHCR1Q8TD31 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC23.58■■□□□ 1.36
CCHCR1Q8TD31 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCHCR1Q8TD31 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCHCR1Q8TD31 ANOS2P-203ENST00000472227 1816 ntBASIC23.57■■□□□ 1.36
CCHCR1Q8TD31 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCHCR1Q8TD31 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCHCR1Q8TD31 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC23.57■■□□□ 1.36
CCHCR1Q8TD31 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC23.57■■□□□ 1.36
CCHCR1Q8TD31 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC23.57■■□□□ 1.36
CCHCR1Q8TD31 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
CCHCR1Q8TD31 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCHCR1Q8TD31 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCHCR1Q8TD31 AC092068.2-201ENST00000590491 1708 ntBASIC23.56■■□□□ 1.36
CCHCR1Q8TD31 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCHCR1Q8TD31 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCHCR1Q8TD31 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCHCR1Q8TD31 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCHCR1Q8TD31 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.36
CCHCR1Q8TD31 AC103834.1-201ENST00000520383 144 ntBASIC23.56■■□□□ 1.36
CCHCR1Q8TD31 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCHCR1Q8TD31 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCHCR1Q8TD31 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCHCR1Q8TD31 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCHCR1Q8TD31 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCHCR1Q8TD31 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCHCR1Q8TD31 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCHCR1Q8TD31 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCHCR1Q8TD31 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC23.55■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms