Protein–RNA interactions for Protein: Q8N1V8

LINC01561, Uncharacterized protein encoded by LINC01561, humanhuman

Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01561Q8N1V8 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LINC01561Q8N1V8 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LINC01561Q8N1V8 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LINC01561Q8N1V8 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LINC01561Q8N1V8 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LINC01561Q8N1V8 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC15.27■□□□□ 0.03
LINC01561Q8N1V8 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC15.27■□□□□ 0.03
LINC01561Q8N1V8 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01561Q8N1V8 AC233723.2-201ENST00000623798 2106 ntBASIC15.26■□□□□ 0.03
LINC01561Q8N1V8 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC15.26■□□□□ 0.03
LINC01561Q8N1V8 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01561Q8N1V8 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01561Q8N1V8 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01561Q8N1V8 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01561Q8N1V8 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
LINC01561Q8N1V8 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01561Q8N1V8 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01561Q8N1V8 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC01561Q8N1V8 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC15.25■□□□□ 0.03
LINC01561Q8N1V8 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LINC01561Q8N1V8 ESRRAP2-201ENST00000418437 1549 ntBASIC15.25■□□□□ 0.03
LINC01561Q8N1V8 AC127496.7-201ENST00000625110 1798 ntBASIC15.25■□□□□ 0.03
LINC01561Q8N1V8 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC01561Q8N1V8 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC01561Q8N1V8 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC01561Q8N1V8 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC01561Q8N1V8 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC01561Q8N1V8 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC15.25■□□□□ 0.03
LINC01561Q8N1V8 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC01561Q8N1V8 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC01561Q8N1V8 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LINC01561Q8N1V8 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC15.25■□□□□ 0.03
LINC01561Q8N1V8 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LINC01561Q8N1V8 GALC-202ENST00000393568 2054 ntTSL 2 BASIC15.24■□□□□ 0.03
LINC01561Q8N1V8 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
LINC01561Q8N1V8 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LINC01561Q8N1V8 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LINC01561Q8N1V8 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
LINC01561Q8N1V8 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
LINC01561Q8N1V8 MIR4449-201ENST00000578365 66 ntBASIC15.24■□□□□ 0.03
LINC01561Q8N1V8 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC15.24■□□□□ 0.03
LINC01561Q8N1V8 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC15.24■□□□□ 0.03
LINC01561Q8N1V8 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC15.24■□□□□ 0.03
LINC01561Q8N1V8 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LINC01561Q8N1V8 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
LINC01561Q8N1V8 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LINC01561Q8N1V8 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LINC01561Q8N1V8 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LINC01561Q8N1V8 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LINC01561Q8N1V8 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 ALDH1A3-203ENST00000557963 1670 ntBASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 PVT1-219ENST00000523427 938 ntTSL 3 BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 MIR6765-201ENST00000614092 87 ntBASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LINC01561Q8N1V8 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LINC01561Q8N1V8 RNF126P1-201ENST00000567452 1320 ntBASIC15.22■□□□□ 0.03
LINC01561Q8N1V8 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LINC01561Q8N1V8 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LINC01561Q8N1V8 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LINC01561Q8N1V8 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LINC01561Q8N1V8 C9orf163-202ENST00000624034 2573 ntBASIC15.22■□□□□ 0.03
LINC01561Q8N1V8 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
LINC01561Q8N1V8 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC15.22■□□□□ 0.03
LINC01561Q8N1V8 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LINC01561Q8N1V8 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC15.22■□□□□ 0.03
LINC01561Q8N1V8 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LINC01561Q8N1V8 GCA-201ENST00000233612 1694 ntTSL 2 BASIC15.22■□□□□ 0.03
LINC01561Q8N1V8 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LINC01561Q8N1V8 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC15.21■□□□□ 0.03
LINC01561Q8N1V8 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
LINC01561Q8N1V8 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
LINC01561Q8N1V8 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LINC01561Q8N1V8 ECEL1P1-201ENST00000373592 1742 ntBASIC15.21■□□□□ 0.03
LINC01561Q8N1V8 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LINC01561Q8N1V8 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC15.21■□□□□ 0.03
LINC01561Q8N1V8 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LINC01561Q8N1V8 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LINC01561Q8N1V8 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
LINC01561Q8N1V8 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC15.21■□□□□ 0.03
LINC01561Q8N1V8 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC15.21■□□□□ 0.03
LINC01561Q8N1V8 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.02
LINC01561Q8N1V8 EI24-204ENST00000527235 1625 ntTSL 5 BASIC15.21■□□□□ 0.02
LINC01561Q8N1V8 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms