Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC20.25■□□□□ 0.83
CCDC58Q4VC31 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CCDC58Q4VC31 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC58Q4VC31 ANOS2P-203ENST00000472227 1816 ntBASIC20.25■□□□□ 0.83
CCDC58Q4VC31 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.25■□□□□ 0.83
CCDC58Q4VC31 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC58Q4VC31 AC092068.2-201ENST00000590491 1708 ntBASIC20.24■□□□□ 0.83
CCDC58Q4VC31 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CCDC58Q4VC31 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.24■□□□□ 0.83
CCDC58Q4VC31 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC58Q4VC31 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC58Q4VC31 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC58Q4VC31 SRP68-213ENST00000629930 165 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC58Q4VC31 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
CCDC58Q4VC31 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC58Q4VC31 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC58Q4VC31 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC58Q4VC31 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC58Q4VC31 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC58Q4VC31 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC58Q4VC31 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC58Q4VC31 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC58Q4VC31 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC58Q4VC31 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC58Q4VC31 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CCDC58Q4VC31 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC58Q4VC31 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC58Q4VC31 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC58Q4VC31 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC58Q4VC31 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC58Q4VC31 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC58Q4VC31 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC58Q4VC31 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC58Q4VC31 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.22■□□□□ 0.83
CCDC58Q4VC31 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC58Q4VC31 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC58Q4VC31 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC58Q4VC31 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC58Q4VC31 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC58Q4VC31 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CCDC58Q4VC31 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC58Q4VC31 DUSP8P3-201ENST00000399571 1760 ntBASIC20.21■□□□□ 0.83
CCDC58Q4VC31 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
CCDC58Q4VC31 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CCDC58Q4VC31 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC58Q4VC31 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC58Q4VC31 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CCDC58Q4VC31 MIR639-201ENST00000384974 98 ntBASIC20.2■□□□□ 0.82
CCDC58Q4VC31 HES4-202ENST00000428771 1040 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC58Q4VC31 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC58Q4VC31 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC58Q4VC31 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CCDC58Q4VC31 AC233723.2-201ENST00000623798 2106 ntBASIC20.2■□□□□ 0.82
CCDC58Q4VC31 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC58Q4VC31 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC58Q4VC31 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC58Q4VC31 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC58Q4VC31 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC58Q4VC31 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.19■□□□□ 0.82
CCDC58Q4VC31 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC58Q4VC31 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC58Q4VC31 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC58Q4VC31 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC58Q4VC31 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC58Q4VC31 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC58Q4VC31 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CCDC58Q4VC31 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
CCDC58Q4VC31 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC58Q4VC31 AC090877.2-201ENST00000558441 1738 ntBASIC20.19■□□□□ 0.82
CCDC58Q4VC31 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC58Q4VC31 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC58Q4VC31 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC58Q4VC31 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC58Q4VC31 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC58Q4VC31 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC58Q4VC31 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC58Q4VC31 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC58Q4VC31 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CCDC58Q4VC31 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC58Q4VC31 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC58Q4VC31 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CCDC58Q4VC31 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC58Q4VC31 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC58Q4VC31 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC58Q4VC31 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC58Q4VC31 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC58Q4VC31 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC58Q4VC31 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC58Q4VC31 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC58Q4VC31 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC58Q4VC31 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC58Q4VC31 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC58Q4VC31 HES4-204ENST00000484667 667 ntTSL 3 BASIC20.17■□□□□ 0.82
CCDC58Q4VC31 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC58Q4VC31 CEP120-209ENST00000515110 606 ntTSL 3 BASIC20.17■□□□□ 0.82
CCDC58Q4VC31 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
CCDC58Q4VC31 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC58Q4VC31 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC58Q4VC31 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC58Q4VC31 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms