Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HMGCS1Q01581 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
HMGCS1Q01581 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HMGCS1Q01581 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGCS1Q01581 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.93■■□□□ 1.1
HMGCS1Q01581 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.93■■□□□ 1.1
HMGCS1Q01581 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGCS1Q01581 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.93■■□□□ 1.1
HMGCS1Q01581 AC012676.1-201ENST00000574705 1949 ntBASIC21.93■■□□□ 1.1
HMGCS1Q01581 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.93■■□□□ 1.1
HMGCS1Q01581 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.93■■□□□ 1.1
HMGCS1Q01581 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGCS1Q01581 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGCS1Q01581 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.92■■□□□ 1.1
HMGCS1Q01581 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGCS1Q01581 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGCS1Q01581 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.92■■□□□ 1.1
HMGCS1Q01581 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGCS1Q01581 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.92■■□□□ 1.1
HMGCS1Q01581 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
HMGCS1Q01581 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGCS1Q01581 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGCS1Q01581 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS1Q01581 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS1Q01581 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS1Q01581 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.91■■□□□ 1.1
HMGCS1Q01581 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.91■■□□□ 1.1
HMGCS1Q01581 THA1P-201ENST00000590384 1145 ntBASIC21.91■■□□□ 1.1
HMGCS1Q01581 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
HMGCS1Q01581 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS1Q01581 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.91■■□□□ 1.1
HMGCS1Q01581 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.91■■□□□ 1.1
HMGCS1Q01581 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS1Q01581 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGCS1Q01581 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
HMGCS1Q01581 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
HMGCS1Q01581 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGCS1Q01581 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
HMGCS1Q01581 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.9■■□□□ 1.1
HMGCS1Q01581 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.9■■□□□ 1.1
HMGCS1Q01581 MIR4281-201ENST00000580852 62 ntBASIC21.9■■□□□ 1.1
HMGCS1Q01581 ALDH1A3-203ENST00000557963 1670 ntBASIC21.9■■□□□ 1.1
HMGCS1Q01581 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGCS1Q01581 AF131216.4-201ENST00000638924 1588 ntBASIC21.9■■□□□ 1.1
HMGCS1Q01581 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
HMGCS1Q01581 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.9■■□□□ 1.1
HMGCS1Q01581 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
HMGCS1Q01581 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
HMGCS1Q01581 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
HMGCS1Q01581 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.89■■□□□ 1.1
HMGCS1Q01581 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.1
HMGCS1Q01581 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.89■■□□□ 1.1
HMGCS1Q01581 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
HMGCS1Q01581 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
HMGCS1Q01581 KRT18P24-201ENST00000344739 1156 ntBASIC21.89■■□□□ 1.09
HMGCS1Q01581 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.89■■□□□ 1.09
HMGCS1Q01581 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.89■■□□□ 1.09
HMGCS1Q01581 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
HMGCS1Q01581 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.89■■□□□ 1.09
HMGCS1Q01581 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.89■■□□□ 1.09
HMGCS1Q01581 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.88■■□□□ 1.09
HMGCS1Q01581 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.88■■□□□ 1.09
HMGCS1Q01581 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.88■■□□□ 1.09
HMGCS1Q01581 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
HMGCS1Q01581 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.88■■□□□ 1.09
HMGCS1Q01581 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.88■■□□□ 1.09
HMGCS1Q01581 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HMGCS1Q01581 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
HMGCS1Q01581 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
HMGCS1Q01581 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
HMGCS1Q01581 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
HMGCS1Q01581 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HMGCS1Q01581 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.87■■□□□ 1.09
HMGCS1Q01581 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
HMGCS1Q01581 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.87■■□□□ 1.09
HMGCS1Q01581 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.87■■□□□ 1.09
HMGCS1Q01581 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.87■■□□□ 1.09
HMGCS1Q01581 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HMGCS1Q01581 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
HMGCS1Q01581 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.87■■□□□ 1.09
HMGCS1Q01581 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
HMGCS1Q01581 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HMGCS1Q01581 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.87■■□□□ 1.09
HMGCS1Q01581 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.86■■□□□ 1.09
HMGCS1Q01581 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGCS1Q01581 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGCS1Q01581 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.86■■□□□ 1.09
HMGCS1Q01581 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
HMGCS1Q01581 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGCS1Q01581 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.86■■□□□ 1.09
HMGCS1Q01581 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGCS1Q01581 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGCS1Q01581 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HMGCS1Q01581 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGCS1Q01581 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGCS1Q01581 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGCS1Q01581 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
HMGCS1Q01581 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.85■■□□□ 1.09
HMGCS1Q01581 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGCS1Q01581 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms